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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001290148.1 → NP_001277077.1 sorting nexin-29 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks several 5' exons but contains an alternate 5' terminal exon, and it thus differs in the 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is shorter than isoform a.
- Source sequence(s)
-
AK017102, CR521963
- Consensus CDS
-
CCDS79422.1
- UniProtKB/Swiss-Prot
-
Q9D3S3
- Related
- ENSMUSP00000093993.3, ENSMUST00000096273.9
- Conserved Domains (2) summary
-
- cd07277
Location:319 → 436
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- pfam10211
Location:123 → 202
- Ax_dynein_light; Axonemal dynein light chain
-
NM_001403235.1 → NP_001390164.1 sorting nexin-29 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC154233, AC154509, AC165252, AC167720
-
NM_001403236.1 → NP_001390165.1 sorting nexin-29 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC154233, AC165252, AC167720
-
NM_001403237.1 → NP_001390166.1 sorting nexin-29 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC154233, AC165252, AC167720
-
NM_001403238.1 → NP_001390167.1 sorting nexin-29 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC154233, AC165252, AC167720
-
NM_001403239.1 → NP_001390168.1 sorting nexin-29 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AC154233, AC154509, AC165252, AC167720
-
NM_028964.5 → NP_083240.2 sorting nexin-29 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
- Source sequence(s)
-
AC154233, AC154509, AC165252, AC167720
- Consensus CDS
-
CCDS27963.2
- UniProtKB/Swiss-Prot
- Q8K050, Q9D3S3
- Related
- ENSMUSP00000138025.2, ENSMUST00000180792.8
- Conserved Domains (3) summary
-
- cd07277
Location:661 → 778
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- pfam02759
Location:44 → 179
- RUN; RUN domain
- pfam10211
Location:465 → 544
- Ax_dynein_light; Axonemal dynein light chain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000082.7 Reference GRCm39 C57BL/6J
- Range
-
11140719..11576959
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036160170.1 → XP_036016063.1 sorting nexin-29 isoform X6
- Conserved Domains (3) summary
-
- cd07277
Location:529 → 646
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- smart00593
Location:1 → 45
- RUN; domain involved in Ras-like GTPase signaling
- COG1196
Location:339 → 501
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_030249318.1 → XP_030105178.1 sorting nexin-29 isoform X2
- Conserved Domains (3) summary
-
- cd07277
Location:606 → 723
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- COG1196
Location:416 → 578
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- pfam02759
Location:1 → 121
- RUN; RUN domain
-
XM_030249320.2 → XP_030105180.1 sorting nexin-29 isoform X9
- Conserved Domains (2) summary
-
- cd07277
Location:509 → 626
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- COG1196
Location:319 → 481
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_036160171.1 → XP_036016064.1 sorting nexin-29 isoform X7
- Conserved Domains (3) summary
-
- cd07277
Location:528 → 645
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- smart00593
Location:1 → 45
- RUN; domain involved in Ras-like GTPase signaling
- COG1196
Location:338 → 500
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_030249319.1 → XP_030105179.1 sorting nexin-29 isoform X8
- Conserved Domains (2) summary
-
- cd07277
Location:510 → 627
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- COG1196
Location:320 → 482
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_006522670.5 → XP_006522733.1 sorting nexin-29 isoform X10
- Conserved Domains (2) summary
-
- cd07277
Location:320 → 437
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- COG1196
Location:130 → 292
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_006522672.5 → XP_006522735.1 sorting nexin-29 isoform X11
- Conserved Domains (2) summary
-
- cd07277
Location:304 → 421
- PX_RUN; The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains
- COG1196
Location:114 → 276
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001163498.1: Suppressed sequence
- Description
- NM_001163498.1: This RefSeq was permanently suppressed because the CDS was partial.