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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001420920.1 → NP_001407849.1 transcription factor SOX-13 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC068906
- UniProtKB/TrEMBL
-
D3Z7I3
-
NM_001420922.1 → NP_001407851.1 transcription factor SOX-13 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC068906
- UniProtKB/Swiss-Prot
- Q04891, Q922L3
- UniProtKB/TrEMBL
-
D3Z7I3
- Related
- ENSMUSP00000092130.5, ENSMUST00000094551.5
-
NM_001420923.1 → NP_001407852.1 transcription factor SOX-13 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC068906
- UniProtKB/Swiss-Prot
- Q04891, Q922L3
- UniProtKB/TrEMBL
-
D3Z7I3
-
NM_001420924.1 → NP_001407853.1 transcription factor SOX-13 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC068906
- UniProtKB/TrEMBL
-
D3Z7I3
-
NM_001420925.1 → NP_001407854.1 transcription factor SOX-13 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC068906
- UniProtKB/TrEMBL
-
D3Z7I3
- Related
- ENSMUSP00000122980.2, ENSMUST00000144386.8
-
NM_011439.3 → NP_035569.2 transcription factor SOX-13 isoform 2
See identical proteins and their annotated locations for NP_035569.2
Status: VALIDATED
- Source sequence(s)
-
AC068906
- Consensus CDS
-
CCDS48363.1
- UniProtKB/Swiss-Prot
- Q04891, Q922L3
- UniProtKB/TrEMBL
-
D3Z7I3
- Related
- ENSMUSP00000119729.3, ENSMUST00000153799.8
- Conserved Domains (1) summary
-
- cd01388
Location:415 → 486
- SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000067.7 Reference GRCm39 C57BL/6J
- Range
-
133310038..133352159 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006529276.5 → XP_006529339.1 transcription factor SOX-13 isoform X3
See identical proteins and their annotated locations for XP_006529339.1
- UniProtKB/TrEMBL
-
D3Z7I3
- Conserved Domains (2) summary
-
- cd01388
Location:417 → 488
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam03154
Location:225 → 334
- Atrophin-1; Atrophin-1 family
-
XM_036162973.1 → XP_036018866.1 transcription factor SOX-13 isoform X2
- UniProtKB/TrEMBL
-
D3Z7I3
- Conserved Domains (1) summary
-
- cd01388
Location:422 → 493
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
-
XM_011247945.4 → XP_011246247.1 transcription factor SOX-13 isoform X1
See identical proteins and their annotated locations for XP_011246247.1
- UniProtKB/TrEMBL
-
D3Z7I3
- Conserved Domains (2) summary
-
- cd01388
Location:423 → 494
- SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
- pfam03154
Location:231 → 340
- Atrophin-1; Atrophin-1 family