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    D730003I15Rik RIKEN cDNA D730003I15 gene [ Mus musculus (house mouse) ]

    Gene ID: 100504360, updated on 22-Oct-2024

    Summary

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    Official Symbol
    D730003I15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D730003I15 geneprovided by MGI
    Primary source
    MGI:MGI:1925971
    See related
    Ensembl:ENSMUSG00000073478 AllianceGenome:MGI:1925971
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in genital fat pad adult (RPKM 4.8), bladder adult (RPKM 2.7) and 25 other tissues See more
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    Genomic context

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    See D730003I15Rik in Genome Data Viewer
    Location:
    1 H6; 1 96.28 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (190956651..190957884)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (191224454..191225687)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene golgi associated RAB2 interactor family member 4 Neighboring gene STARR-positive B cell enhancer ABC_E4405 Neighboring gene STARR-seq mESC enhancer starr_03429 Neighboring gene activating transcription factor 3 Neighboring gene STARR-positive B cell enhancer ABC_E2027 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:193017813-193017996 Neighboring gene STARR-positive B cell enhancer mm9_chr1:193021775-193022076 Neighboring gene STARR-positive B cell enhancer ABC_E1578 Neighboring gene STARR-positive B cell enhancer ABC_E4407 Neighboring gene STARR-positive B cell enhancer ABC_E7786 Neighboring gene STARR-positive B cell enhancer mm9_chr1:193099421-193099721 Neighboring gene STARR-positive B cell enhancer ABC_E3354 Neighboring gene STARR-positive B cell enhancer ABC_E11113 Neighboring gene STARR-positive B cell enhancer ABC_E7787 Neighboring gene neuron derived neurotrophic factor Neighboring gene proton activated chloride channel 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_151547.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA839082, AC115896, AK021325
      Related
      ENSMUST00000242612.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      190956651..190957884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033188.1: Suppressed sequence

      Description
      NM_001033188.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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