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    UTS2 urotensin 2 [ Homo sapiens (human) ]

    Gene ID: 10911, updated on 27-Nov-2024

    Summary

    Official Symbol
    UTS2provided by HGNC
    Official Full Name
    urotensin 2provided by HGNC
    Primary source
    HGNC:HGNC:12636
    See related
    Ensembl:ENSG00000049247 MIM:604097; AllianceGenome:HGNC:12636
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    UII; U-II; UCN2; PRO1068
    Summary
    This gene encodes a mature peptide that is an active cyclic heptapeptide absolutely conserved from lamprey to human. The active peptide acts as a vasoconstrictor and is expressed only in brain tissue. Despite the gene family name similarity, this gene is not homologous to urocortin, a member of the sauvagine/corticotropin-releasing factor/urotensin I family. Most of the proprotein is cleaved to make the mature peptide. Transcript variants encoding different preproprotein isoforms have been described for this gene. [provided by RefSeq, Jul 2008]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See UTS2 in Genome Data Viewer
    Location:
    1p36.23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (7847612..7913249, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (7378659..7444444, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (7907672..7913551, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 186 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:7831283-7831525 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 187 Neighboring gene vesicle associated membrane protein 3 Neighboring gene period circadian regulator 3 Neighboring gene uncharacterized LOC124903833 Neighboring gene MPRA-validated peak42 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:7886590-7887789 Neighboring gene NANOG hESC enhancer GRCh37_chr1:7912645-7913333 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:7929285-7930484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7935645-7936144 Neighboring gene NANOG hESC enhancer GRCh37_chr1:7970949-7971450 Neighboring gene tRNA-undetermined (NNN) 4-1 Neighboring gene TNF receptor superfamily member 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 188 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 92 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 93 Neighboring gene H3K27ac hESC enhancers GRCh37_chr1:8020839-8021622 and GRCh37_chr1:8021623-8022406 Neighboring gene Parkinsonism associated deglycase

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables signaling receptor binding TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in blood vessel diameter maintenance IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in chemical synaptic transmission TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in muscle contraction TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in regulation of blood pressure IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region TAS
    Traceable Author Statement
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    urotensin-2
    Names
    prepro U-II
    urotensin II

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_006786.4NP_006777.1  urotensin-2 isoform b preproprotein

      See identical proteins and their annotated locations for NP_006777.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) encodes a shorter preproprotein isoform (b) of 124 amino acids with a different amino-terminal end compared to isoform a. The mature peptide is identical for both transcript variants.
      Source sequence(s)
      AF104118, AY358375, Z98884
      Consensus CDS
      CCDS91.1
      UniProtKB/Swiss-Prot
      O95399, Q5H8X7, Q6UXF6, Q9UKP7
      UniProtKB/TrEMBL
      Q5H8X8
      Related
      ENSP00000355163.5, ENST00000361696.10
      Conserved Domains (1) summary
      pfam02083
      Location:113124
      Urotensin_II; Urotensin II
    2. NM_021995.2NP_068835.1  urotensin-2 isoform a preproprotein

      See identical proteins and their annotated locations for NP_068835.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes a longer preproprotein isoform (a) of 139 amino acids with a different amino-terminal end compared to isoform b. The mature peptide is identical for both transcript variants.
      Source sequence(s)
      AF140630, AY358375, BC126443
      Consensus CDS
      CCDS90.1
      UniProtKB/Swiss-Prot
      O95399
      UniProtKB/TrEMBL
      A0AVP6
      Related
      ENSP00000054668.5, ENST00000054668.5
      Conserved Domains (1) summary
      pfam02083
      Location:128139
      Urotensin_II; Urotensin II

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      7847612..7913249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011540537.3XP_011538839.1  urotensin-2 isoform X1

      See identical proteins and their annotated locations for XP_011538839.1

      UniProtKB/Swiss-Prot
      O95399
      Conserved Domains (1) summary
      pfam02083
      Location:128139
      Urotensin_II; Urotensin II
    2. XM_011540538.2XP_011538840.1  urotensin-2 isoform X2

      See identical proteins and their annotated locations for XP_011538840.1

      UniProtKB/Swiss-Prot
      O95399, Q5H8X7, Q6UXF6, Q9UKP7
      UniProtKB/TrEMBL
      Q5H8X8
      Conserved Domains (1) summary
      pfam02083
      Location:113124
      Urotensin_II; Urotensin II

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      7378659..7444444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054333954.1XP_054189929.1  urotensin-2 isoform X1

    2. XM_054333955.1XP_054189930.1  urotensin-2 isoform X2