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    Fundc1 FUN14 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 72018, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fundc1provided by MGI
    Official Full Name
    FUN14 domain containing 1provided by MGI
    Primary source
    MGI:MGI:1919268
    See related
    Ensembl:ENSMUSG00000025040 AllianceGenome:MGI:1919268
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500005J14Rik; 1810033P05Rik
    Summary
    Predicted to be involved in mitophagy and response to hypoxia. Predicted to be active in mitochondrial outer membrane. Is expressed in thymus primordium. Orthologous to human FUNDC1 (FUN14 domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 10.0), frontal lobe adult (RPKM 6.3) and 24 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Fundc1 in Genome Data Viewer
    Location:
    X A1.2; X 12.8 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (17386206..17438600, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (17519967..17572329, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 35105 Neighboring gene predicted gene, 22294 Neighboring gene predicted gene, 39497 Neighboring gene STARR-seq mESC enhancer starr_46824 Neighboring gene STARR-seq mESC enhancer starr_46825 Neighboring gene STARR-seq mESC enhancer starr_46826 Neighboring gene STARR-seq mESC enhancer starr_46827 Neighboring gene mortality factor 4 like 2 pseudogene Neighboring gene heat shock protein 8 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. FUDNC1-dependent mitophagy ameliorate motor neuron death in an amyotrophic lateral sclerosis mouse model. Guo X, et al. Neurobiol Dis, 2024 Jul. PMID 38759931
    2. Silencing of FUN14 Domain Containing 1 Inhibits Platelet Activation in Diabetes Mellitus through Blocking Mitophagy. Wu Q, et al. Crit Rev Immunol, 2024. PMID 38305334
    3. Src inhibition rescues FUNDC1-mediated neuronal mitophagy in ischaemic stroke. Tang T, et al. Stroke Vasc Neurol, 2024 Aug 27. PMID 37793899, Free PMC Article
    4. Mitophagy receptor FUNDC1 regulates mitochondrial homeostasis and protects the heart from I/R injury. Zhang W, et al. Autophagy, 2017 Jun 3. PMID 28323531, Free PMC Article
    5. FUNDC1 modulates mitochondrial defects and pancreatic β-cell dysfunction under lipotoxicity. Tong B, et al. Biochem Biophys Res Commun, 2023 Sep 10. PMID 37336125

    See all (53) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Nuclear receptor subfamily 4 group A member 1 promotes myocardial ischemia/reperfusion injury through inducing mitochondrial fission factor-mediated mitochondrial fragmentation and inhibiting FUN14 domain containing 1-depedent mitophagy.
      Title: Nuclear receptor subfamily 4 group A member 1 promotes myocardial ischemia/reperfusion injury through inducing mitochondrial fission factor-mediated mitochondrial fragmentation and inhibiting FUN14 domain containing 1-depedent mitophagy.
    2. Src inhibition rescues FUNDC1-mediated neuronal mitophagy in ischaemic stroke.
      Title: Src inhibition rescues FUNDC1-mediated neuronal mitophagy in ischaemic stroke.
    3. FUDNC1-dependent mitophagy ameliorate motor neuron death in an amyotrophic lateral sclerosis mouse model.
      Title: FUDNC1-dependent mitophagy ameliorate motor neuron death in an amyotrophic lateral sclerosis mouse model.
    4. Silencing of FUN14 Domain Containing 1 Inhibits Platelet Activation in Diabetes Mellitus through Blocking Mitophagy.
      Title: Silencing of FUN14 Domain Containing 1 Inhibits Platelet Activation in Diabetes Mellitus through Blocking Mitophagy.
    5. Neutrophil extracellular traps aggravate intestinal epithelial necroptosis in ischaemia-reperfusion by regulating TLR4/RIPK3/FUNDC1-required mitophagy.
      Title: Neutrophil extracellular traps aggravate intestinal epithelial necroptosis in ischaemia-reperfusion by regulating TLR4/RIPK3/FUNDC1-required mitophagy.
    6. FUNDC1 interacts with GPx4 to govern hepatic ferroptosis and fibrotic injury through a mitophagy-dependent manner.
      Title: FUNDC1 interacts with GPx4 to govern hepatic ferroptosis and fibrotic injury through a mitophagy-dependent manner.
    7. FUNDC1 modulates mitochondrial defects and pancreatic beta-cell dysfunction under lipotoxicity.
      Title: FUNDC1 modulates mitochondrial defects and pancreatic β-cell dysfunction under lipotoxicity.
    8. Exercise protects aged mice against coronary endothelial senescence via FUNDC1-dependent mitophagy.
      Title: Exercise protects aged mice against coronary endothelial senescence via FUNDC1-dependent mitophagy.
    9. FUNDC1 protects against doxorubicin-induced cardiomyocyte PANoptosis through stabilizing mtDNA via interaction with TUFM.
      Title: FUNDC1 protects against doxorubicin-induced cardiomyocyte PANoptosis through stabilizing mtDNA via interaction with TUFM.
    10. FUNDC1-mediated mitophagy and HIF1alpha activation drives pulmonary hypertension during hypoxia.
      Title: FUNDC1-mediated mitophagy and HIF1α activation drives pulmonary hypertension during hypoxia.
    Submit: New GeneRIF Correction See all GeneRIFs (24)

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (5)  1 citation
    • Targeted (2) 

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagy of mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within autophagy of mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in autophagy of mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in autophagy of mitochondrion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in mitochondrial fusion IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mitophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mitophagy ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within response to hypoxia ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    involved_in response to hypoxia ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in response to hypoxia ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrial outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrial outer membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in mitochondrial outer membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    FUN14 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001313745.1 → NP_001300674.1  FUN14 domain-containing protein 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' end compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AK005163, BM934468, BX005345
      Consensus CDS
      CCDS85750.1
      UniProtKB/TrEMBL
      H3BJZ1
      Related
      ENSMUSP00000135183.2, ENSMUST00000176638.8
      Conserved Domains (1) summary
      pfam04930
      Location:54 → 110
      FUN14; FUN14 family

    2. NM_001313746.1 → NP_001300675.1  FUN14 domain-containing protein 1 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate exon in place of the first exon compared to variant 1. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      BM934468, BX005345, BY061369, CD805077
      Consensus CDS
      CCDS85749.1
      UniProtKB/TrEMBL
      H3BJ77
      Related
      ENSMUSP00000135026.2, ENSMUST00000142638.2
      Conserved Domains (1) summary
      pfam04930
      Location:11 → 110
      FUN14; FUN14 family

    3. NM_028058.4 → NP_082334.1  FUN14 domain-containing protein 1 isoform 1

      See identical proteins and their annotated locations for NP_082334.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AK005163, BM934468, BX005345
      Consensus CDS
      CCDS30035.1
      UniProtKB/Swiss-Prot
      A2BEA3, Q9DB70
      Related
      ENSMUSP00000026016.7, ENSMUST00000026016.13
      Conserved Domains (1) summary
      pfam04930
      Location:54 → 153
      FUN14; FUN14 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      17386206..17438600 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011247496.4 → XP_011245798.1  FUN14 domain-containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam04930
      Location:54 → 93
      FUN14; FUN14 family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DB70.1 GenPept UniProtKB/Swiss-Prot:Q9DB70

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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