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    AU019990 expressed sequence AU019990 [ Mus musculus (house mouse) ]

    Gene ID: 767814, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AU019990provided by MGI
    Official Full Name
    expressed sequence AU019990provided by MGI
    Primary source
    MGI:MGI:3034641
    See related
    Ensembl:ENSMUSG00000074783 AllianceGenome:MGI:3034641
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See AU019990 in Genome Data Viewer
    Location:
    2 F2; 2 64.74 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (132440116..132494987)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (132598196..132653067)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700026D11 gene Neighboring gene STARR-positive B cell enhancer ABC_E10150 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132338174-132338621 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132339740-132339927 Neighboring gene STARR-positive B cell enhancer ABC_E4500 Neighboring gene glycerophosphocholine phosphodiesterase 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:132433520-132433703 Neighboring gene STARR-seq mESC enhancer starr_05747 Neighboring gene ribosomal protein L23A, pseudogene 4 Neighboring gene ubiquitin-conjugating enzyme E2S pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033468.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      AK166556
      Related
      ENSMUST00000153028.8

    2. NR_033469.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks internal two exons and has a longer 5' exon and an alternate 3' exon, as compared to variant 1.
      Source sequence(s)
      AA414212, AK135901, BB729657, BG069619

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      132440116..132494987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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