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    Ccdc54 coiled-coil domain containing 54 [ Mus musculus (house mouse) ]

    Gene ID: 69339, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc54provided by MGI
    Official Full Name
    coiled-coil domain containing 54provided by MGI
    Primary source
    MGI:MGI:1916589
    See related
    Ensembl:ENSMUSG00000050685 AllianceGenome:MGI:1916589
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NYD-SP17; 1700007N18Rik
    Summary
    Orthologous to human CCDC54 (coiled-coil domain containing 54). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human all
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    Genomic context

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    See Ccdc54 in Genome Data Viewer
    Location:
    16 B5; 16 31.5 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (50410222..50411517, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (50589859..50591154, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA G730013B05 gene Neighboring gene predicted gene, 41459 Neighboring gene STARR-seq mESC enhancer starr_40993 Neighboring gene RIKEN cDNA 4930542D17 gene Neighboring gene protease (prosome, macropain) 26S subunit, ATPase 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_40994 Neighboring gene microRNA 6363 Neighboring gene Dppa2 upstream binding RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 54
    Names
    testes development-related NYD-SP17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027046.4 → NP_081322.1  coiled-coil domain-containing protein 54

      See identical proteins and their annotated locations for NP_081322.1

      Status: VALIDATED

      Source sequence(s)
      AC138306
      Consensus CDS
      CCDS28214.1
      UniProtKB/Swiss-Prot
      Q9DAL3
      Related
      ENSMUSP00000049864.5, ENSMUST00000062439.6
      Conserved Domains (1) summary
      COG3883
      Location:89 → 146
      CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      50410222..50411517 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DAL3.1 GenPept UniProtKB/Swiss-Prot:Q9DAL3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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