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    RNVU1-19 RNA, variant U1 small nuclear 19 [ Homo sapiens (human) ]

    Gene ID: 101954277, updated on 2-Nov-2024

    Summary

    Official Symbol
    RNVU1-19provided by HGNC
    Official Full Name
    RNA, variant U1 small nuclear 19provided by HGNC
    Primary source
    HGNC:HGNC:48324
    See related
    Ensembl:ENSG00000275538 AllianceGenome:HGNC:48324
    Gene type
    snRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    vU1.13; vU1.19; RNU1-126; RNU1-147; RNVU1-13
    Summary
    Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See RNVU1-19 in Genome Data Viewer
    Location:
    1p11.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (120850819..120850985, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (120860219..120860386, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (149514090..149514256, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1249 Neighboring gene notch 2 N-terminal like R Neighboring gene NBPF member 26 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1602 Neighboring gene tRNA-Asn (anticodon GTT) 7-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1603 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1251 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:147993136-147993980 Neighboring gene uncharacterized LOC124904393 Neighboring gene peptidylprolyl isomerase A like 4A Neighboring gene uncharacterized LOC100996720 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149577239-149577777 Neighboring gene long intergenic non-protein coding RNA 623

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Other Names

    • RNA, variant U1 small nuclear 13

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables pre-mRNA 5'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104086.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC253572
      Related
      ENST00000613023.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      120850819..120850985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791753.1 Reference GRCh38.p14 PATCHES

      Range
      461312..461478 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      120860219..120860386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)