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    Cfap96 cilia and flagella associated protein 96 [ Mus musculus (house mouse) ]

    Gene ID: 69479, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Cfap96provided by MGI
    Official Full Name
    cilia and flagella associated protein 96provided by MGI
    Primary source
    MGI:MGI:1916729
    See related
    Ensembl:ENSMUSG00000071103 AllianceGenome:MGI:1916729
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700029J07Rik
    Summary
    Predicted to be located in 9+0 non-motile cilium. Predicted to be active in centrosome and cytoplasmic microtubule. Orthologous to human CFAP96 (cilia and flagella associated protein 96). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 7.3), bladder adult (RPKM 2.5) and 14 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Cfap96 in Genome Data Viewer
    Location:
    8 B1.1; 8 25.94 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (46387980..46428290, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (45939196..45975488, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 25309 Neighboring gene PDZ and LIM domain 3 Neighboring gene STARR-seq mESC enhancer starr_21375 Neighboring gene STARR-positive B cell enhancer mm9_chr8:47020100-47020401 Neighboring gene coiled-coil domain containing 110 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:47060555-47060664 Neighboring gene UFM1-specific peptidase 2 Neighboring gene STARR-positive B cell enhancer ABC_E10496 Neighboring gene ankyrin repeat domain 37 Neighboring gene Lrp2 binding protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC130198

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in 9+0 non-motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in centrosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in cytoplasmic microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasmic microtubule IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cilia-and flagella-associated protein 96
    Names
    UPF0602 protein C4orf47 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033148.3 → NP_001028320.1  cilia-and flagella-associated protein 96

      See identical proteins and their annotated locations for NP_001028320.1

      Status: VALIDATED

      Source sequence(s)
      AC114558
      Consensus CDS
      CCDS22283.1
      UniProtKB/Swiss-Prot
      Q3U1D9
      Related
      ENSMUSP00000092961.2, ENSMUST00000095323.8
      Conserved Domains (1) summary
      pfam15239
      Location:10 → 294
      DUF4586; Domain of unknown function (DUF4586)

    2. NM_001359113.1 → NP_001346042.1  cilia-and flagella-associated protein 96

      Status: VALIDATED

      Source sequence(s)
      AC114558
      Consensus CDS
      CCDS22283.1
      UniProtKB/Swiss-Prot
      Q3U1D9
      Related
      ENSMUSP00000096383.3, ENSMUST00000098786.3
      Conserved Domains (1) summary
      pfam15239
      Location:10 → 294
      DUF4586; Domain of unknown function (DUF4586)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      46387980..46428290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004934873.1 RNA Sequence

    2. XR_378912.5 RNA Sequence

    3. XR_003947334.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3U1D9.1 GenPept UniProtKB/Swiss-Prot:Q3U1D9

    Gene LinkOut

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