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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001290740.3 → NP_001277669.1 pre-mRNA-splicing factor CWC22 homolog isoform 3
See identical proteins and their annotated locations for NP_001277669.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice junction compared to variant 4. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 4. Variants 3, 11, and 12 all encode the same isoform (3).
- Source sequence(s)
-
AL928791, AL928915
- Consensus CDS
-
CCDS71080.1
- UniProtKB/TrEMBL
- B1AYU7, Q6ZPL7
- Related
- ENSMUSP00000107450.2, ENSMUST00000111819.8
- Conserved Domains (4) summary
-
- smart00543
Location:163 → 344
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:722 → 895
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 168
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:455 → 561
- MA3; MA3 domain
-
NM_001362657.3 → NP_001349586.1 pre-mRNA-splicing factor CWC22 homolog isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) encodes the longest isoform (4).
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
-
Q6ZPL7
- Conserved Domains (4) summary
-
- smart00543
Location:163 → 344
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:717 → 902
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 168
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:455 → 561
- MA3; MA3 domain
-
NM_001362658.3 → NP_001349587.1 pre-mRNA-splicing factor CWC22 homolog isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) uses an alternate in-frame splice junction compared to variant 4. The resulting isoform (1) has the same N- and C-termini but is 1 aa shorter compared to isoform 4. Variants 1 and 5 both encode the same isoform (1).
- Source sequence(s)
-
AL928791, AL928915
- Consensus CDS
-
CCDS16165.1
- UniProtKB/Swiss-Prot
- Q3UEH0, Q3V267, Q8BR58, Q8C5N3, Q99KV6
- UniProtKB/TrEMBL
-
Q6ZPL7
- Related
- ENSMUSP00000107452.3, ENSMUST00000111821.9
- Conserved Domains (4) summary
-
- smart00543
Location:162 → 343
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:716 → 901
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 167
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:454 → 560
- MA3; MA3 domain
-
NM_001362659.3 → NP_001349588.1 pre-mRNA-splicing factor CWC22 homolog isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and uses two alternate in-frame splice junctions compared to variant 4. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 4. Variants 2 and 6 both encode the same isoform (2).
- Source sequence(s)
-
AL928791, AL928915
- Consensus CDS
-
CCDS57178.1
- UniProtKB/TrEMBL
-
Q6ZPL7
- Conserved Domains (4) summary
-
- smart00543
Location:162 → 343
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:721 → 894
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 167
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:454 → 560
- MA3; MA3 domain
-
NM_001362664.3 → NP_001349593.1 pre-mRNA-splicing factor CWC22 homolog isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) differs in the 3' UTR and coding sequence and uses two alternate in-frame splice junctions compared to isoform 4. The resulting isoform (5) lacks an alternate internal aa and has a shorter and distinct C-terminus compared to isoform 4.
- Source sequence(s)
-
AL928791, AL928915
- Consensus CDS
-
CCDS89500.1
- UniProtKB/TrEMBL
- A2AK42, A2AK44, B1AYU4
- Related
- ENSMUSP00000107455.2, ENSMUST00000111824.8
- Conserved Domains (3) summary
-
- smart00543
Location:162 → 343
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- cl02653
Location:454 → 560
- MA3; MA3 domain
- cl25887
Location:9 → 167
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
-
NM_001421935.1 → NP_001408864.1 pre-mRNA-splicing factor CWC22 homolog isoform 4
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
-
Q6ZPL7
-
NM_001421937.1 → NP_001408866.1 pre-mRNA-splicing factor CWC22 homolog isoform 6
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
-
Q6ZPL7
-
NM_001421938.1 → NP_001408867.1 pre-mRNA-splicing factor CWC22 homolog isoform 7
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
-
Q6ZPL7
-
NM_001421939.1 → NP_001408868.1 pre-mRNA-splicing factor CWC22 homolog isoform 3
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
- B1AYU7, Q6ZPL7
-
NM_001421940.1 → NP_001408869.1 pre-mRNA-splicing factor CWC22 homolog isoform 3
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
- B1AYU7, Q6ZPL7
-
NM_001421941.1 → NP_001408870.1 pre-mRNA-splicing factor CWC22 homolog isoform 8
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
-
Q6ZPL7
-
NM_001421942.1 → NP_001408871.1 pre-mRNA-splicing factor CWC22 homolog isoform 9
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
-
Q6ZPL7
-
NM_001421943.1 → NP_001408872.1 pre-mRNA-splicing factor CWC22 homolog isoform 10
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
-
Q6ZPL7
-
NM_001421944.1 → NP_001408873.1 pre-mRNA-splicing factor CWC22 homolog isoform 11
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
-
NM_001421945.1 → NP_001408874.1 pre-mRNA-splicing factor CWC22 homolog isoform 11
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
-
NM_001421946.1 → NP_001408875.1 pre-mRNA-splicing factor CWC22 homolog isoform 12
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
- UniProtKB/TrEMBL
-
Q8BKP8
- Related
-
ENSMUST00000127351.8
-
NM_030560.7 → NP_085037.2 pre-mRNA-splicing factor CWC22 homolog isoform 1
See identical proteins and their annotated locations for NP_085037.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR and uses an alternate in-frame splice junction compared to variant 4. The resulting isoform (1) has the same N- and C-termini but is 1 aa shorter compared to isoform 4. Variants 1 and 5 both encode the same isoform (1).
- Source sequence(s)
-
AL928791, AL928915
- Consensus CDS
-
CCDS16165.1
- UniProtKB/Swiss-Prot
- Q3UEH0, Q3V267, Q8BR58, Q8C5N3, Q99KV6
- UniProtKB/TrEMBL
-
Q6ZPL7
- Related
- ENSMUSP00000064947.4, ENSMUST00000065889.10
- Conserved Domains (4) summary
-
- smart00543
Location:162 → 343
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:716 → 901
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 167
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:454 → 560
- MA3; MA3 domain
-
NM_172667.4 → NP_766255.1 pre-mRNA-splicing factor CWC22 homolog isoform 2
See identical proteins and their annotated locations for NP_766255.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses two alternate in-frame splice junctions compared to variant 4. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 4. Variants 2 and 6 both encode the same isoform (2).
- Source sequence(s)
-
AL928791, AL928915
- Consensus CDS
-
CCDS57178.1
- UniProtKB/TrEMBL
-
Q6ZPL7
- Related
- ENSMUSP00000107449.2, ENSMUST00000111818.8
- Conserved Domains (4) summary
-
- smart00543
Location:162 → 343
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:721 → 894
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 167
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:454 → 560
- MA3; MA3 domain
RNA
-
NR_185472.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL928791, AL928915
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
77706312..77776705 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036162730.1 → XP_036018623.1 pre-mRNA-splicing factor CWC22 homolog isoform X4
- UniProtKB/TrEMBL
-
Q6ZPL7
- Conserved Domains (4) summary
-
- smart00543
Location:162 → 343
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:721 → 894
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 167
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:454 → 560
- MA3; MA3 domain
-
XM_036162729.1 → XP_036018622.1 pre-mRNA-splicing factor CWC22 homolog isoform X3
- UniProtKB/TrEMBL
- B1AYU7, Q6ZPL7
- Conserved Domains (4) summary
-
- smart00543
Location:163 → 344
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:722 → 895
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 168
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:455 → 561
- MA3; MA3 domain
-
XM_030252257.2 → XP_030108117.1 pre-mRNA-splicing factor CWC22 homolog isoform X2
- UniProtKB/Swiss-Prot
- Q3UEH0, Q3V267, Q8BR58, Q8C5N3, Q99KV6
- UniProtKB/TrEMBL
-
Q6ZPL7
- Conserved Domains (4) summary
-
- smart00543
Location:162 → 343
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:716 → 901
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 167
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:454 → 560
- MA3; MA3 domain
-
XM_006500435.5 → XP_006500498.1 pre-mRNA-splicing factor CWC22 homolog isoform X1
See identical proteins and their annotated locations for XP_006500498.1
- UniProtKB/TrEMBL
-
Q6ZPL7
- Conserved Domains (4) summary
-
- smart00543
Location:163 → 344
- MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
- PRK12678
Location:717 → 902
- PRK12678; transcription termination factor Rho; Provisional
- TIGR01642
Location:9 → 168
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- pfam02847
Location:455 → 561
- MA3; MA3 domain
RNA
-
XR_004940784.1 RNA Sequence
-
XR_004940783.1 RNA Sequence