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    ELK2AP ETS transcription factor ELK2A, pseudogene [ Homo sapiens (human) ]

    Gene ID: 2003, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ELK2APprovided by HGNC
    Official Full Name
    ETS transcription factor ELK2A, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:3323
    See related
    AllianceGenome:HGNC:3323
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ELK2; ELK2.1; ELK2P1
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    Genomic context

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    See ELK2AP in Genome Data Viewer
    Location:
    14q32.33
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (105669577..105672807, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (99941971..99945201, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (106135914..106139144, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene microRNA 8071-2 Neighboring gene immunoglobulin heavy locus Neighboring gene immunoglobulin heavy constant gamma 2 (G2m marker) Neighboring gene immunoglobulin heavy constant gamma P (non-functional) Neighboring gene immunoglobulin heavy constant epsilon P1 (pseudogene) Neighboring gene immunoglobulin heavy constant alpha 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Structural organization of the human Elk1 gene and its processed pseudogene Elk2. Yamauchi T, et al. DNA Res, 1999 Feb 26. PMID 10231026
    2. The human elk-1 gene family: the functional gene and two processed pseudogenes embedded in the IgH locus. Harindranath N, et al. Gene, 1998 Oct 23. PMID 9795224
    3. Locations of the ets subfamily members net, elk1, and sap1 (ELK3, ELK1, and ELK4) on three homologous regions of the mouse and human genomes. Giovane A, et al. Genomics, 1995 Oct 10. PMID 8575773
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • ELK1, member of ETS oncogene family pseudogene
    • ELK2, member of ETS oncogene family, pseudogene 1
    • ELK2A, member of ETS oncogene family, pseudogene

    Clone Names

    • MGC39713

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_001019.6 

      Range
      1207538..1210768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_046211.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL928769

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      105669577..105672807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187600.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      137346..140576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      99941971..99945201 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_001114.1: Suppressed sequence

      Description
      NG_001114.1: This RefSeq was permanently suppressed because this gene is now included in the immunoglobulin heavy locus on chromosome 14.
    Nucleotide Protein
    Heading Accession and Version

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