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    LINC02225 long intergenic non-protein coding RNA 2225 [ Homo sapiens (human) ]

    Gene ID: 101928539, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02225provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2225provided by HGNC
    Primary source
    HGNC:HGNC:53094
    See related
    Ensembl:ENSG00000249584 AllianceGenome:HGNC:53094
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02225 in Genome Data Viewer
    Location:
    5q11.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (57890331..57899162, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (58719139..58727966, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (57186158..57194989, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901182 Neighboring gene lncRNA SMARCA2 (BRM) associated Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:56937789-56938367 Neighboring gene uncharacterized LOC101928505 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:56988450-56989649 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:56994597-56995101 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:57011915-57013114 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:57030843-57032042 Neighboring gene Sharpr-MPRA regulatory region 14061 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:57131079-57131587 Neighboring gene Sharpr-MPRA regulatory region 14379 Neighboring gene NANOG hESC enhancer GRCh37_chr5:57141460-57142040 Neighboring gene Sharpr-MPRA regulatory region 13165 Neighboring gene uncharacterized LOC124901183 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:57363636-57364835 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109900.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116606
      Related
      ENST00000510444.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      57890331..57899162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      58719139..58727966 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)