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    LINC00427 long intergenic non-protein coding RNA 427 [ Homo sapiens (human) ]

    Gene ID: 100507040, updated on 12-Sep-2024

    Summary

    Official Symbol
    LINC00427provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 427provided by HGNC
    Primary source
    HGNC:HGNC:42762
    See related
    Ensembl:ENSG00000236463 AllianceGenome:HGNC:42762
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LINC00427 in Genome Data Viewer
    Location:
    13q12.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (30316370..30319903, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29538839..29542374, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (30890507..30894040, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene katanin catalytic subunit A1 like 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:30860016-30860638 Neighboring gene RNA, U6 small nuclear 64, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5229 Neighboring gene peroxiredoxin 2 pseudogene 1 Neighboring gene uncharacterized LOC124903145 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:30912012-30913211 Neighboring gene long intergenic non-protein coding RNA 426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5230 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5232 Neighboring gene long intergenic non-protein coding RNA 1058

    Genomic regions, transcripts, and products

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_186618.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356750
      Related
      ENST00000412722.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      30316370..30319903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      29538839..29542374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)