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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_031901.1 RefSeqGene
- Range
-
5321..15926
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001253852.3 → NP_001240781.1 AP-4 complex subunit beta-1 isoform 1
See identical proteins and their annotated locations for NP_001240781.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AI431352, AL137856, AW072594, BC014146, DC368382
- Consensus CDS
-
CCDS865.1
- UniProtKB/Swiss-Prot
- B7Z4X3, Q59EJ4, Q96CL6, Q9Y6B7
- UniProtKB/TrEMBL
-
B2RBF6
- Related
- ENSP00000358582.1, ENST00000369569.6
- Conserved Domains (3) summary
-
- sd00044
Location:86 → 113
- HEAT; HEAT repeat [structural motif]
- pfam09066
Location:621 → 730
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
- cl26317
Location:9 → 525
- Adaptin_N; Adaptin N terminal region
-
NM_001253853.3 → NP_001240782.1 AP-4 complex subunit beta-1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate acceptor splice site at an internal exon compared to variant 1. This results in translation initiation from an in-frame downstream start site, and an isoform (2) with a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AI431352, AK300204, AL137856, AW072594, BC014146, HY012945
- UniProtKB/TrEMBL
-
B4DTG3
- Conserved Domains (4) summary
-
- pfam01602
Location:1 → 426
- Adaptin_N; Adaptin N terminal region
- pfam09066
Location:522 → 631
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
- pfam12717
Location:2 → 166
- Cnd1; non-SMC mitotic condensation complex subunit 1
- sd00044
Location:22 → 50
- HEAT; HEAT repeat [structural motif]
-
NM_001308312.2 → NP_001295241.1 AP-4 complex subunit beta-1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and lacks multiple consecutive in-frame exons in the 5' coding region, compared to variant 1. The resulting protein (isoform 3) has the same N- and C-termini, but is shorter than isoform 1.
- Source sequence(s)
-
AI431352, AK093740, AL137856, AW072594, BC014146
- Consensus CDS
-
CCDS76192.1
- UniProtKB/TrEMBL
- B1ALD0, B1ALD3, B3KSJ4
- Related
- ENSP00000358580.1, ENST00000369567.6
- Conserved Domains (2) summary
-
- pfam01602
Location:13 → 357
- Adaptin_N; Adaptin N terminal region
- pfam09066
Location:453 → 562
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
-
NM_006594.5 → NP_006585.2 AP-4 complex subunit beta-1 isoform 1
See identical proteins and their annotated locations for NP_006585.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the predominant transcript, and encodes the longer isoform (1). Variants 1 and 2 encode the same isoform.
- Source sequence(s)
-
AI431352, AL137856, AW072594, BC014146, HY012945
- Consensus CDS
-
CCDS865.1
- UniProtKB/Swiss-Prot
- B7Z4X3, Q59EJ4, Q96CL6, Q9Y6B7
- UniProtKB/TrEMBL
-
B2RBF6
- Related
- ENSP00000256658.4, ENST00000256658.8
- Conserved Domains (3) summary
-
- sd00044
Location:86 → 113
- HEAT; HEAT repeat [structural motif]
- pfam09066
Location:621 → 730
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
- cl26317
Location:9 → 525
- Adaptin_N; Adaptin N terminal region
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
113894194..113905028 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017000090.2 → XP_016855579.1 AP-4 complex subunit beta-1 isoform X5
- UniProtKB/TrEMBL
- B1ALD0, B1ALD3, B3KSJ4
- Related
- ENSP00000393622.2, ENST00000432415.6
- Conserved Domains (2) summary
-
- pfam01602
Location:13 → 357
- Adaptin_N; Adaptin N terminal region
- pfam09066
Location:453 → 562
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
-
XM_024452435.2 → XP_024308203.1 AP-4 complex subunit beta-1 isoform X6
- UniProtKB/TrEMBL
-
B4DTG3
- Conserved Domains (3) summary
-
- sd00044
Location:46 → 74
- HEAT; HEAT repeat [structural motif]
- pfam09066
Location:442 → 551
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
- pfam12717
Location:37 → 185
- Cnd1; non-SMC mitotic condensation complex subunit 1
-
XM_011540523.4 → XP_011538825.1 AP-4 complex subunit beta-1 isoform X2
See identical proteins and their annotated locations for XP_011538825.1
- UniProtKB/TrEMBL
- B1ALD1, B4DTG3
- Related
- ENSP00000358577.2, ENST00000369564.6
- Conserved Domains (3) summary
-
- smart01020
Location:545 → 657
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
- PTZ00429
Location:37 → 458
- PTZ00429; beta-adaptin; Provisional
- sd00044
Location:46 → 74
- HEAT; HEAT repeat [structural motif]
-
XM_017000091.3 → XP_016855580.1 AP-4 complex subunit beta-1 isoform X7
- UniProtKB/TrEMBL
-
B3KSJ4
-
XM_011540525.4 → XP_011538827.1 AP-4 complex subunit beta-1 isoform X3
- UniProtKB/TrEMBL
-
B3KSJ4
- Conserved Domains (2) summary
-
- pfam09066
Location:528 → 637
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
- cl26317
Location:9 → 432
- Adaptin_N; Adaptin N terminal region
-
XM_024452423.2 → XP_024308191.1 AP-4 complex subunit beta-1 isoform X4
- UniProtKB/TrEMBL
-
B2RBF6
- Conserved Domains (3) summary
-
- sd00044
Location:86 → 113
- HEAT; HEAT repeat [structural motif]
- pfam09066
Location:517 → 626
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
- cl26317
Location:9 → 400
- Adaptin_N; Adaptin N terminal region
-
XM_047438847.1 → XP_047294803.1 AP-4 complex subunit beta-1 isoform X1
- UniProtKB/Swiss-Prot
- B7Z4X3, Q59EJ4, Q96CL6, Q9Y6B7
- UniProtKB/TrEMBL
-
B2RBF6
- Related
- ENSP00000358584.3, ENST00000369571.3
-
XM_024452441.2 → XP_024308209.1 AP-4 complex subunit beta-1 isoform X9
- UniProtKB/TrEMBL
-
B3KSJ4
- Conserved Domains (2) summary
-
- pfam09066
Location:349 → 458
- B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
- cl26317
Location:42 → 232
- Adaptin_N; Adaptin N terminal region
-
XM_047439008.1 → XP_047294964.1 AP-4 complex subunit beta-1 isoform X8
- UniProtKB/TrEMBL
-
B3KSJ4
-
XM_047439078.1 → XP_047295034.1 AP-4 complex subunit beta-1 isoform X11
-
XM_047439052.1 → XP_047295008.1 AP-4 complex subunit beta-1 isoform X10
- UniProtKB/TrEMBL
-
A0AAQ5BGJ8
- Related
- ENSP00000518951.1, ENST00000713649.1
-
XM_017000093.3 → XP_016855582.1 AP-4 complex subunit beta-1 isoform X12
- UniProtKB/TrEMBL
- A0AAQ5BGI8, A0AAQ5BGL5
- Related
- ENSP00000518949.1, ENST00000713647.1
- Conserved Domains (3) summary
-
- pfam01602
Location:30 → 401
- Adaptin_N; Adaptin N terminal region
- pfam12717
Location:98 → 265
- Cnd1; non-SMC mitotic condensation complex subunit 1
- sd00044
Location:86 → 113
- HEAT; HEAT repeat [structural motif]
RNA
-
XR_007066904.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
113905856..113916690 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054333913.1 → XP_054189888.1 AP-4 complex subunit beta-1 isoform X5
- UniProtKB/TrEMBL
- B1ALD0, B1ALD3, B3KSJ4
-
XM_054333914.1 → XP_054189889.1 AP-4 complex subunit beta-1 isoform X6
- UniProtKB/TrEMBL
-
B4DTG3
-
XM_054333910.1 → XP_054189885.1 AP-4 complex subunit beta-1 isoform X2
- UniProtKB/TrEMBL
- B1ALD1, B4DTG3
-
XM_054333915.1 → XP_054189890.1 AP-4 complex subunit beta-1 isoform X7
- UniProtKB/TrEMBL
-
B3KSJ4
-
XM_054333911.1 → XP_054189886.1 AP-4 complex subunit beta-1 isoform X3
- UniProtKB/TrEMBL
-
B3KSJ4
-
XM_054333912.1 → XP_054189887.1 AP-4 complex subunit beta-1 isoform X4
- UniProtKB/TrEMBL
-
B2RBF6
-
XM_054333909.1 → XP_054189884.1 AP-4 complex subunit beta-1 isoform X1
- UniProtKB/Swiss-Prot
- B7Z4X3, Q59EJ4, Q96CL6, Q9Y6B7
- UniProtKB/TrEMBL
-
B2RBF6
-
XM_054333917.1 → XP_054189892.1 AP-4 complex subunit beta-1 isoform X9
- UniProtKB/TrEMBL
-
B3KSJ4
-
XM_054333916.1 → XP_054189891.1 AP-4 complex subunit beta-1 isoform X8
- UniProtKB/TrEMBL
-
B3KSJ4
-
XM_054333919.1 → XP_054189894.1 AP-4 complex subunit beta-1 isoform X11
-
XM_054333918.1 → XP_054189893.1 AP-4 complex subunit beta-1 isoform X10
- UniProtKB/TrEMBL
-
A0AAQ5BGJ8
-
XM_054333920.1 → XP_054189895.1 AP-4 complex subunit beta-1 isoform X12
- UniProtKB/TrEMBL
- A0AAQ5BGI8, A0AAQ5BGL5
RNA
-
XR_008485876.1 RNA Sequence