U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    WFDC21P WAP four-disulfide core domain 21, pseudogene [ Homo sapiens (human) ]

    Gene ID: 645638, updated on 2-Nov-2024

    Summary

    Official Symbol
    WFDC21Pprovided by HGNC
    Official Full Name
    WAP four-disulfide core domain 21, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:50357
    See related
    Ensembl:ENSG00000293515 MIM:615772; AllianceGenome:HGNC:50357
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LNCDC; lnc-DC; linc-DC
    Summary
    Predicted to enable enzyme activator activity. Predicted to act upstream of or within response to lipopolysaccharide; response to tumor necrosis factor; and white fat cell differentiation. Predicted to be located in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in esophagus (RPKM 17.0), skin (RPKM 14.1) and 7 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See WFDC21P in Genome Data Viewer
    Location:
    17q23.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (60083566..60088467, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (60952521..60957422, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (58160927..58165828, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene HEAT repeat containing 6 Neighboring gene microRNA 4737 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 1 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8786 Neighboring gene HEATR6 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12524 Neighboring gene adaptor related protein complex 1 subunit sigma 2 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58190476-58191424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58191425-58192371 Neighboring gene uncharacterized LOC100996660 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12526

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • WDNM1-like pseudogene
    • lnc-dendritic cell lncRNA
    • long non-coding RNA, dendritic cell differentiation

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_030732.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048
      Related
      ENST00000566140.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      60083566..60088467 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      60952521..60957422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)