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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001083963.1 → NP_001077432.1 tudor and KH domain-containing protein isoform a
See identical proteins and their annotated locations for NP_001077432.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, and 3 all encode isoform a.
- Source sequence(s)
-
AK226092, BC022467, DA796638
- Consensus CDS
-
CCDS41394.1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Related
- ENSP00000395718.2, ENST00000458431.6
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
-
NM_001083964.1 → NP_001077433.1 tudor and KH domain-containing protein isoform b
See identical proteins and their annotated locations for NP_001077433.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate inframe segment in the coding region compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
- Source sequence(s)
-
AK226092, BC022467, DA796638
- Consensus CDS
-
CCDS41395.1
- UniProtKB/TrEMBL
-
B4DZR8
- Related
- ENSP00000357817.3, ENST00000368825.7
- Conserved Domains (4) summary
-
- cd04508
Location:312 → 359
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- pfam00013
Location:54 → 112
- KH_1; KH domain
- pfam00567
Location:258 → 377
- TUDOR; Tudor domain
- pfam10573
Location:147 → 204
- UPF0561; uncharacterized protein family UPF0561
-
NM_001083965.2 → NP_001077434.1 tudor and KH domain-containing protein isoform a
See identical proteins and their annotated locations for NP_001077434.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1, 2, and 3 all encode isoform a.
- Source sequence(s)
-
AF227192, AK226092, AL589765, BC022467, DA796638
- Consensus CDS
-
CCDS41394.1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Related
- ENSP00000357815.3, ENST00000368824.8
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
-
NM_006862.4 → NP_006853.2 tudor and KH domain-containing protein isoform a
See identical proteins and their annotated locations for NP_006853.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 3' UTR compared to variant 1. Variants 1, 2, and 3 all encode isoform a.
- Source sequence(s)
-
AF119121, AL589765, BC032690, DA796638
- Consensus CDS
-
CCDS41394.1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Related
- ENSP00000357819.6, ENST00000368827.10
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
151766486..151790534 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047441989.1 → XP_047297945.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_047442008.1 → XP_047297964.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_017000123.3 → XP_016855612.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
-
XM_017000126.2 → XP_016855615.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
-
XM_017000127.2 → XP_016855616.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
-
XM_017000128.2 → XP_016855617.1 tudor and KH domain-containing protein isoform X2
- UniProtKB/TrEMBL
-
B4DJ68
- Conserved Domains (2) summary
-
- cd04508
Location:133 → 180
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- pfam00567
Location:79 → 198
- TUDOR; Tudor domain
-
XM_017000124.2 → XP_016855613.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
-
XM_017000125.2 → XP_016855614.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Related
- ENSP00000357812.1, ENST00000368822.5
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
-
XM_017000122.3 → XP_016855611.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
- Conserved Domains (4) summary
-
- cd04508
Location:357 → 404
- TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
- cd00105
Location:54 → 116
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
- pfam00567
Location:303 → 422
- TUDOR; Tudor domain
- pfam10573
Location:192 → 249
- UPF0561; uncharacterized protein family UPF0561
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
150889872..150914019 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054333965.1 → XP_054189940.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_054333966.1 → XP_054189941.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_054333963.1 → XP_054189938.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_054333967.1 → XP_054189942.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_054333968.1 → XP_054189943.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_054333969.1 → XP_054189944.1 tudor and KH domain-containing protein isoform X2
- UniProtKB/TrEMBL
-
B4DJ68
-
XM_054333962.1 → XP_054189937.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_054333964.1 → XP_054189939.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8
-
XM_054333961.1 → XP_054189936.1 tudor and KH domain-containing protein isoform X1
- UniProtKB/Swiss-Prot
- D3DV24, Q5SZR3, Q5SZR5, Q8N582, Q9NYV5, Q9Y2W6
- UniProtKB/TrEMBL
-
B4DZR8