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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_023421.2 RefSeqGene
- Range
-
5040..35966
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_1019
mRNA and Protein(s)
-
NM_001193314.2 → NP_001180243.1 spermatogenesis-defective protein 39 homolog isoform 1
See identical proteins and their annotated locations for NP_001180243.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, 3 and 4 encode the same protein (isoform 1).
- Source sequence(s)
-
AF111168
- Consensus CDS
-
CCDS9862.1
- UniProtKB/Swiss-Prot
- B4DPI6, O95434, Q9H7E1, Q9H9C1, Q9H9I9
- UniProtKB/TrEMBL
- Q53H75, Q6IA61
- Related
- ENSP00000452181.1, ENST00000553888.5
- Conserved Domains (1) summary
-
- pfam09787
Location:26 → 471
- Golgin_A5; Golgin subfamily A member 5
-
NM_001193315.2 → NP_001180244.1 spermatogenesis-defective protein 39 homolog isoform 1
See identical proteins and their annotated locations for NP_001180244.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein (isoform 1).
- Source sequence(s)
-
AF111168, AK022769, AW629161
- Consensus CDS
-
CCDS9862.1
- UniProtKB/Swiss-Prot
- B4DPI6, O95434, Q9H7E1, Q9H9C1, Q9H9I9
- UniProtKB/TrEMBL
- Q53H75, Q6IA61
- Related
- ENSP00000452191.1, ENST00000557658.6
- Conserved Domains (1) summary
-
- pfam09787
Location:26 → 471
- Golgin_A5; Golgin subfamily A member 5
-
NM_001193316.2 → NP_001180245.1 spermatogenesis-defective protein 39 homolog isoform 2
See identical proteins and their annotated locations for NP_001180245.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and lacks an alternate in-frame exon in the 5' coding region compared to variant 1. The resulting protein (isoform 2) is shorter compared to isoform 1.
- Source sequence(s)
-
AF111168
- Consensus CDS
-
CCDS53905.1
- UniProtKB/TrEMBL
-
Q53H75
- Related
- ENSP00000404815.2, ENST00000448935.6
- Conserved Domains (1) summary
-
- pfam09787
Location:26 → 422
- Golgin_A5; Golgin subfamily A member 5
-
NM_001193317.2 → NP_001180246.1 spermatogenesis-defective protein 39 homolog isoform 1
See identical proteins and their annotated locations for NP_001180246.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein (isoform 1).
- Source sequence(s)
-
AF111168
- Consensus CDS
-
CCDS9862.1
- UniProtKB/Swiss-Prot
- B4DPI6, O95434, Q9H7E1, Q9H9C1, Q9H9I9
- UniProtKB/TrEMBL
- Q53H75, Q6IA61
- Related
- ENSP00000451857.1, ENST00000556412.4
- Conserved Domains (1) summary
-
- pfam09787
Location:26 → 471
- Golgin_A5; Golgin subfamily A member 5
-
NM_001400324.1 → NP_001387253.1 spermatogenesis-defective protein 39 homolog isoform 2
Status: REVIEWED
- Source sequence(s)
-
AF111168
- Consensus CDS
-
CCDS53905.1
- UniProtKB/TrEMBL
-
Q53H75
- Related
- ENSP00000313098.5, ENST00000327028.8
-
NM_001400325.1 → NP_001387254.1 spermatogenesis-defective protein 39 homolog isoform 2
Status: REVIEWED
- Source sequence(s)
-
AF111168
- Consensus CDS
-
CCDS53905.1
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400326.1 → NP_001387255.1 spermatogenesis-defective protein 39 homolog isoform 1
Status: REVIEWED
- Source sequence(s)
-
AF111168
- Consensus CDS
-
CCDS9862.1
- UniProtKB/Swiss-Prot
- B4DPI6, O95434, Q9H7E1, Q9H9C1, Q9H9I9
- UniProtKB/TrEMBL
- Q53H75, Q6IA61
-
NM_001400327.1 → NP_001387256.1 spermatogenesis-defective protein 39 homolog isoform 4
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400330.1 → NP_001387259.1 spermatogenesis-defective protein 39 homolog isoform 5
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400331.1 → NP_001387260.1 spermatogenesis-defective protein 39 homolog isoform 5
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400332.1 → NP_001387261.1 spermatogenesis-defective protein 39 homolog isoform 5
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400333.1 → NP_001387262.1 spermatogenesis-defective protein 39 homolog isoform 6
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400334.1 → NP_001387263.1 spermatogenesis-defective protein 39 homolog isoform 6
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400335.1 → NP_001387264.1 spermatogenesis-defective protein 39 homolog isoform 7
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400336.1 → NP_001387265.1 spermatogenesis-defective protein 39 homolog isoform 8
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400337.1 → NP_001387266.1 spermatogenesis-defective protein 39 homolog isoform 9
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400338.1 → NP_001387267.1 spermatogenesis-defective protein 39 homolog isoform 10
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_001400339.1 → NP_001387268.1 spermatogenesis-defective protein 39 homolog isoform 11
Status: REVIEWED
- Source sequence(s)
-
AF111168
- UniProtKB/TrEMBL
-
Q53H75
-
NM_022067.4 → NP_071350.2 spermatogenesis-defective protein 39 homolog isoform 1
See identical proteins and their annotated locations for NP_071350.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3 and 4 encode the same protein (isoform 1).
- Source sequence(s)
-
AF111168
- Consensus CDS
-
CCDS9862.1
- UniProtKB/Swiss-Prot
- B4DPI6, O95434, Q9H7E1, Q9H9C1, Q9H9I9
- UniProtKB/TrEMBL
- Q53H75, Q6IA61
- Related
- ENSP00000339122.2, ENST00000343765.6
- Conserved Domains (1) summary
-
- pfam09787
Location:26 → 471
- Golgin_A5; Golgin subfamily A member 5
RNA
-
NR_174476.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AF111168
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000014.9 Reference GRCh38.p14 Primary Assembly
- Range
-
77426675..77457601 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017021581.3 → XP_016877070.1 spermatogenesis-defective protein 39 homolog isoform X1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060938.1 Alternate T2T-CHM13v2.0
- Range
-
71636055..71666984 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054376556.1 → XP_054232531.1 spermatogenesis-defective protein 39 homolog isoform X1