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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001349012.1 → NP_001335941.1 testis-specific gene 10 protein isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-3 encode the same isoform (1).
- Source sequence(s)
-
AC019097, AC092587, AC110083
- Consensus CDS
-
CCDS2037.1
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Related
- ENSP00000377122.3, ENST00000393482.7
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
-
NM_001349013.2 → NP_001335942.1 testis-specific gene 10 protein isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and lacks three alternate in-frame exons in the 5' coding region compared to variant 1. Both variants 4 and 5 encode the same isoform (2).
- Source sequence(s)
-
AC019097, AC092587, AC110083
- UniProtKB/TrEMBL
-
B2R8F9
- Conserved Domains (2) summary
-
- cl25632
Location:90 → 280
- type_I_hlyD; type I secretion membrane fusion protein, HlyD family
- cl25732
Location:214 → 490
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001349014.1 → NP_001335943.1 testis-specific gene 10 protein isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and lacks three alternate in-frame exons in the 5' coding region compared to variant 1. Both variants 4 and 5 encode the same isoform (2).
- Source sequence(s)
-
AC019097, AC092587
- UniProtKB/TrEMBL
-
B2R8F9
- Conserved Domains (2) summary
-
- cl25632
Location:90 → 280
- type_I_hlyD; type I secretion membrane fusion protein, HlyD family
- cl25732
Location:214 → 490
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_025244.4 → NP_079520.1 testis-specific gene 10 protein isoform 1
See identical proteins and their annotated locations for NP_079520.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Variants 1-3 encode the same isoform (1).
- Source sequence(s)
-
AC019097, AC092587, AF254756, BX647157, DB085678, DC396566
- Consensus CDS
-
CCDS2037.1
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Related
- ENSP00000377123.3, ENST00000393483.8
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
-
NM_182911.4 → NP_878915.2 testis-specific gene 10 protein isoform 1
See identical proteins and their annotated locations for NP_878915.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-3 encode the same isoform (1).
- Source sequence(s)
-
AC019097, AC092587, AF254756, BC028366, BI562202
- Consensus CDS
-
CCDS2037.1
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Related
- ENSP00000347161.4, ENST00000355053.8
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
RNA
-
NR_146001.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) contains an alternate first exon and lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC019097, AC092587, AC110083
-
NR_146053.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) has an alternate 5' and 3' exon structure compared to variant 1. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.
- Source sequence(s)
-
AC092587, BE044403, BX490754
- Related
-
ENST00000465216.1
-
NR_146054.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) has an alternate 5' and 3' exon structure compared to variant 1. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.
- Source sequence(s)
-
AC092587, BE044403
-
NR_146055.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) has an alternate 5' and 3' exon structure compared to variant 1. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.
- Source sequence(s)
-
AC092587, BE044403
- Related
-
ENST00000489348.1
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
98997261..99154966 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047445934.1 → XP_047301890.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_047445931.1 → XP_047301887.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_047445932.1 → XP_047301888.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_017005041.3 → XP_016860530.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
-
XM_047445929.1 → XP_047301885.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_047445930.1 → XP_047301886.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_047445928.1 → XP_047301884.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_047445933.1 → XP_047301889.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_005264023.2 → XP_005264080.1 testis-specific gene 10 protein isoform X6
See identical proteins and their annotated locations for XP_005264080.1
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Related
- ENSP00000386508.2, ENST00000409564.6
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
-
XM_017005035.2 → XP_016860524.1 testis-specific gene 10 protein isoform X2
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_011511935.4 → XP_011510237.1 testis-specific gene 10 protein isoform X4
- UniProtKB/TrEMBL
-
B2R8F9
- Conserved Domains (3) summary
-
- COG1196
Location:268 → 632
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
- COG4372
Location:540 → 743
- COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
- TIGR02168
Location:70 → 399
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
XM_011511934.1 → XP_011510236.1 testis-specific gene 10 protein isoform X1
- UniProtKB/TrEMBL
-
A0A669KBL0
- Related
- ENSP00000501312.1, ENST00000674128.1
- Conserved Domains (1) summary
-
- pfam05377
Location:50 → 96
- FlaC_arch; Flagella accessory protein C (FlaC)
-
XM_017005044.2 → XP_016860533.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
-
XM_024453158.2 → XP_024308926.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Related
- ENSP00000386956.1, ENST00000410001.5
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
-
XM_006712781.3 → XP_006712844.1 testis-specific gene 10 protein isoform X6
See identical proteins and their annotated locations for XP_006712844.1
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
-
XM_017005046.2 → XP_016860535.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
- Conserved Domains (2) summary
-
- cl25732
Location:140 → 504
- SMC_N; RecF/RecN/SMC N terminal domain
- cl26472
Location:412 → 615
- DUF3084; Protein of unknown function (DUF3084)
-
XM_017005037.1 → XP_016860526.1 testis-specific gene 10 protein isoform X5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
99455791..99613837 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054344073.1 → XP_054200048.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_054344063.1 → XP_054200038.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_054344064.1 → XP_054200039.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_054344068.1 → XP_054200043.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_054344061.1 → XP_054200036.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_054344062.1 → XP_054200037.1 testis-specific gene 10 protein isoform X3
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_054344069.1 → XP_054200044.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_054344067.1 → XP_054200042.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_054344065.1 → XP_054200040.1 testis-specific gene 10 protein isoform X4
- UniProtKB/TrEMBL
-
B2R8F9
-
XM_054344059.1 → XP_054200034.1 testis-specific gene 10 protein isoform X1
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_054344060.1 → XP_054200035.1 testis-specific gene 10 protein isoform X2
- UniProtKB/TrEMBL
-
A0A669KBL0
-
XM_054344070.1 → XP_054200045.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_054344071.1 → XP_054200046.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_054344072.1 → XP_054200047.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_054344074.1 → XP_054200049.1 testis-specific gene 10 protein isoform X6
- UniProtKB/Swiss-Prot
- B7Z925, D3DVH7, Q8NEP0, Q9BWX0, Q9BZW7
- UniProtKB/TrEMBL
- A0A218MIY9, B2R8F9
-
XM_054344066.1 → XP_054200041.1 testis-specific gene 10 protein isoform X5