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    pelD pellicle/biofilm biosynthesis protein PelD [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 880405, updated on 14-Nov-2024

    Summary

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    Gene symbol
    pelD
    Gene description
    pellicle/biofilm biosynthesis protein PelD
    Locus tag
    PA3061
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
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    Genomic context

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    Sequence:
    NC_002516.2 (3425555..3426922, complement)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene pellicle/biofilm biosynthesis Wzx-like polysaccharide transporter PelG Neighboring gene pellicle/biofilm biosynthesis glycosyltransferase PelF Neighboring gene pellicle/biofilm biosynthesis protein PelE Neighboring gene pellicle/biofilm biosynthesis outer membrane protein PelC Neighboring gene pellicle/biofilm biosynthesis protein PelB Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structures of the PelD cyclic diguanylate effector involved in pellicle formation in Pseudomonas aeruginosa PAO1. Li Z, et al. J Biol Chem, 2012 Aug 31. PMID 22810222, Free PMC Article
    2. Pel Polysaccharide Biosynthesis Requires an Inner Membrane Complex Comprised of PelD, PelE, PelF, and PelG. Whitfield GB, et al. J Bacteriol, 2020 Mar 26. PMID 31988082, Free PMC Article
    3. The Pel and Psl polysaccharides provide Pseudomonas aeruginosa structural redundancy within the biofilm matrix. Colvin KM, et al. Environ Microbiol, 2012 Aug. PMID 22176658, Free PMC Article
    4. Structure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa. Whitney JC, et al. J Biol Chem, 2012 Jul 6. PMID 22605337, Free PMC Article
    5. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Pel Polysaccharide Biosynthesis Requires an Inner Membrane Complex Comprised of PelD, PelE, PelF, and PelG.
      Title: Pel Polysaccharide Biosynthesis Requires an Inner Membrane Complex Comprised of PelD, PelE, PelF, and PelG.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by PseudoCAP

    Function Evidence Code Pubs
    enables cyclic-di-GMP binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within polysaccharide biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pellicle/biofilm biosynthesis protein PelD
    NP_251751.1
    • class 1: Function experimentally demonstrated in P. aeruginosa

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      3425555..3426922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_251751.1 pellicle/biofilm biosynthesis protein PelD [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_251751.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3M5DAC2
      Conserved Domains (2) summary
      pfam13185
      Location:178 → 308
      GAF_2; GAF domain
      pfam16963
      Location:320 → 444
      PelD_GGDEF; PelD GGDEF domain
    Nucleotide Protein
    Heading Accession and Version

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