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    Faap100 FA core complex associated protein 100 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303742, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Faap100provided by RGD
    Official Full Name
    FA core complex associated protein 100provided by RGD
    Primary source
    RGD:1306926
    See related
    EnsemblRapid:ENSRNOG00000036699 AllianceGenome:RGD:1306926
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306926
    Summary
    Predicted to be involved in interstrand cross-link repair. Predicted to be located in chromatin and cytosol. Predicted to be part of Fanconi anaemia nuclear complex. Predicted to be active in nucleoplasm. Orthologous to human FAAP100 (FA core complex associated protein 100). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 45.6), Adrenal (RPKM 34.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Faap100 in Genome Data Viewer
    Location:
    10q32.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (106140820..106152500, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (105641677..105653809, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (109539381..109552434, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095311 Neighboring gene fascin actin-bundling protein 2, retinal Neighboring gene uncharacterized LOC134480918 Neighboring gene NPL4 homolog, ubiquitin recognition factor Neighboring gene tetraspanin 10 Neighboring gene phosphodiesterase 6G

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in interstrand cross-link repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Fanconi anaemia nuclear complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromatin ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    Fanconi anemia core complex-associated protein 100
    Names
    Fanconi anemia core complex associated protein 100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      106140820..106152500 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039087819.2 → XP_038943747.1  Fanconi anemia core complex-associated protein 100 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZNL4, D3ZX03
      Related
      ENSRNOP00000079865.1, ENSRNOT00000103912.2
      Conserved Domains (1) summary
      pfam15146
      Location:482 → 913
      FANCAA; Fanconi anemia-associated

    2. XM_039087820.2 → XP_038943748.1  Fanconi anemia core complex-associated protein 100 isoform X2

      UniProtKB/TrEMBL
      D3ZX03
      Conserved Domains (1) summary
      pfam15146
      Location:302 → 733
      FANCAA; Fanconi anemia-associated

    RNA

    1. XR_010055917.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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