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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_050648.2 RefSeqGene
- Range
-
5002..164100
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_005761.3 → NP_005752.1 plexin-C1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the functional protein.
- Source sequence(s)
-
AC073655, AC123567
- Consensus CDS
-
CCDS9049.1
- UniProtKB/Swiss-Prot
- O60486, Q59H25
- Related
- ENSP00000258526.4, ENST00000258526.9
- Conserved Domains (6) summary
-
- cd11246
Location:44 → 453
- Sema_plexin_C1; The Sema domain, a protein interacting module, of Plexin C1
- smart00423
Location:591 → 635
- PSI; domain found in Plexins, Semaphorins and Integrins
- smart00429
Location:753 → 841
- IPT; ig-like, plexins, transcription factors
- pfam01437
Location:454 → 507
- PSI; Plexin repeat
- pfam01833
Location:664 → 750
- TIG; IPT/TIG domain
- pfam08337
Location:1012 → 1535
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
RNA
-
NR_037687.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks multiple 5' exons but contains an alternate 5' exon, compared to variant 1. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest in-frame ORF. Translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC073655
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
94148577..94307675
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006719186.5 → XP_006719249.1 plexin-C1 isoform X1
- Conserved Domains (6) summary
-
- cd11246
Location:44 → 453
- Sema_plexin_C1; The Sema domain, a protein interacting module, of Plexin C1
- smart00423
Location:591 → 635
- PSI; domain found in Plexins, Semaphorins and Integrins
- smart00429
Location:753 → 841
- IPT; ig-like, plexins, transcription factors
- pfam01437
Location:454 → 507
- PSI; Plexin repeat
- pfam01833
Location:664 → 750
- TIG; IPT/TIG domain
- pfam08337
Location:1012 → 1522
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
-
XM_047428050.1 → XP_047284006.1 plexin-C1 isoform X2
-
XM_011537730.4 → XP_011536032.1 plexin-C1 isoform X3
- Conserved Domains (6) summary
-
- cd11246
Location:44 → 453
- Sema_plexin_C1; The Sema domain, a protein interacting module, of Plexin C1
- smart00423
Location:591 → 635
- PSI; domain found in Plexins, Semaphorins and Integrins
- smart00429
Location:753 → 841
- IPT; ig-like, plexins, transcription factors
- pfam01437
Location:454 → 507
- PSI; Plexin repeat
- pfam01833
Location:664 → 750
- TIG; IPT/TIG domain
- pfam08337
Location:1012 → 1292
- Plexin_cytopl; Plexin cytoplasmic RasGAP domain
-
XM_011537731.4 → XP_011536033.1 plexin-C1 isoform X4
- Conserved Domains (6) summary
-
- cd11246
Location:44 → 453
- Sema_plexin_C1; The Sema domain, a protein interacting module, of Plexin C1
- smart00423
Location:591 → 635
- PSI; domain found in Plexins, Semaphorins and Integrins
- smart00429
Location:753 → 841
- IPT; ig-like, plexins, transcription factors
- pfam01437
Location:454 → 507
- PSI; Plexin repeat
- pfam01833
Location:664 → 750
- TIG; IPT/TIG domain
- cl02569
Location:1010 → 1029
- RasGAP; Ras GTPase Activating Domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
94129732..94288500
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054370727.1 → XP_054226702.1 plexin-C1 isoform X1
-
XM_054370728.1 → XP_054226703.1 plexin-C1 isoform X2
-
XM_054370729.1 → XP_054226704.1 plexin-C1 isoform X3
-
XM_054370730.1 → XP_054226705.1 plexin-C1 isoform X4