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    Lyrm9 LYR motif containing 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 497962, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Lyrm9provided by RGD
    Official Full Name
    LYR motif containing 9provided by RGD
    Primary source
    RGD:1562012
    See related
    EnsemblRapid:ENSRNOG00000037204 AllianceGenome:RGD:1562012
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562012
    Summary
    Predicted to be located in mitochondrion. Orthologous to human LYRM9 (LYR motif containing 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 74.9), Muscle (RPKM 57.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lyrm9 in Genome Data Viewer
    Location:
    10q25
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (64223732..64237791)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (63725718..63739772)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (66099478..66113559)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene nemo like kinase Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4-like Neighboring gene cyclin Q Neighboring gene LYR motif containing 9 like 1 Neighboring gene uncharacterized LOC120095150 Neighboring gene NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase, pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LYR motif-containing protein 9
    Names
    UPF0631 protein C17orf108 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001173471.1 → NP_001166942.1  LYR motif-containing protein 9

      See identical proteins and their annotated locations for NP_001166942.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/Swiss-Prot
      B2RZD7
      Related
      ENSRNOP00000053037.2, ENSRNOT00000056192.5
      Conserved Domains (1) summary
      cd20269
      Location:13 → 73
      Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      64223732..64237791
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008768097.4 → XP_008766319.1  LYR motif-containing protein 9 isoform X1

      Conserved Domains (1) summary
      cd20269
      Location:13 → 80
      Complex1_LYR_LYRM9; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 9 (LYRM9) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B2RZD7.1 GenPept UniProtKB/Swiss-Prot:B2RZD7

    Gene LinkOut

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