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    Ogfrl1 opioid growth factor receptor-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 316290, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ogfrl1provided by RGD
    Official Full Name
    opioid growth factor receptor-like 1provided by RGD
    Primary source
    RGD:1308498
    See related
    EnsemblRapid:ENSRNOG00000014142 AllianceGenome:RGD:1308498
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable opioid growth factor receptor activity. Predicted to be located in membrane. Orthologous to human OGFRL1 (opioid growth factor receptor like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 258.5), Brain (RPKM 194.7) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ogfrl1 in Genome Data Viewer
    Location:
    9q13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (33320501..33338742, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (25828865..25842424, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (29634178..29647903, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480562 Neighboring gene ring-box 1, pseudogene 1 Neighboring gene microRNA 30c-2 Neighboring gene ribosomal protein L10A, pseudogene 8 Neighboring gene uncharacterized LOC120094843 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene 60S ribosomal protein L29-like Neighboring gene beta-1,3-glucuronyltransferase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC116379

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables opioid growth factor receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    opioid growth factor receptor-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025708.1 → NP_001020879.1  opioid growth factor receptor-like protein 1

      See identical proteins and their annotated locations for NP_001020879.1

      Status: PROVISIONAL

      Source sequence(s)
      BC099205
      UniProtKB/Swiss-Prot
      Q4KLH3
      Conserved Domains (2) summary
      pfam05887
      Location:6 → 93
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)
      pfam04664
      Location:114 → 320
      OGFr_N; Opioid growth factor receptor (OGFr) conserved region

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      33320501..33338742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039083549.2 → XP_038939477.1  opioid growth factor receptor-like protein 1 isoform X1

      UniProtKB/TrEMBL
      F1M9G3
      Related
      ENSRNOP00000019062.6, ENSRNOT00000019062.8
      Conserved Domains (1) summary
      pfam04664
      Location:115 → 321
      OGFr_N; Opioid growth factor receptor (OGFr) conserved region
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4KLH3.1 GenPept UniProtKB/Swiss-Prot:Q4KLH3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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