U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ccdc28a coiled-coil domain containing 28A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361454, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc28aprovided by RGD
    Official Full Name
    coiled-coil domain containing 28Aprovided by RGD
    Primary source
    RGD:1310326
    See related
    EnsemblRapid:ENSRNOG00000053347 AllianceGenome:RGD:1310326
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310326
    Summary
    Orthologous to human CCDC28A (coiled-coil domain containing 28A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 40.7), Thymus (RPKM 36.2) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ccdc28a in Genome Data Viewer
    Location:
    1p12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (14677451..14692729, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (12857668..12872944, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (13384153..13395643, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ABRA C-terminal like Neighboring gene RALBP1 associated Eps domain containing 1 Neighboring gene epithelial cell transforming 2 like Neighboring gene uncharacterized LOC102549233 Neighboring gene uncharacterized LOC102549339

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 28A
    Names
    chemokine C-C motif receptor-like 1 adjacent

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037789.1NP_001032878.1  coiled-coil domain-containing protein 28A

      See identical proteins and their annotated locations for NP_001032878.1

      Status: PROVISIONAL

      Source sequence(s)
      BC100268
      UniProtKB/TrEMBL
      Q498D0
      Related
      ENSRNOP00000069590.3, ENSRNOT00000085519.3
      Conserved Domains (1) summary
      pfam13270
      Location:83168
      DUF4061; Domain of unknown function (DUF4061)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      14677451..14692729 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063266008.1XP_063122078.1  coiled-coil domain-containing protein 28A isoform X3

      UniProtKB/TrEMBL
      Q498D0
    2. XM_039081106.2XP_038937034.1  coiled-coil domain-containing protein 28A isoform X1

      UniProtKB/TrEMBL
      A0A0G2JVR7
      Conserved Domains (1) summary
      pfam13270
      Location:83166
      DUF4061; Domain of unknown function (DUF4061)
    3. XM_063266007.1XP_063122077.1  coiled-coil domain-containing protein 28A isoform X3

      UniProtKB/TrEMBL
      Q498D0
    4. XM_063265998.1XP_063122068.1  coiled-coil domain-containing protein 28A isoform X1

      UniProtKB/TrEMBL
      A0A0G2JVR7
    5. XM_039081103.2XP_038937031.1  coiled-coil domain-containing protein 28A isoform X1

      UniProtKB/TrEMBL
      A0A0G2JVR7
      Conserved Domains (1) summary
      pfam13270
      Location:83166
      DUF4061; Domain of unknown function (DUF4061)
    6. XM_063266001.1XP_063122071.1  coiled-coil domain-containing protein 28A isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZQU5
    7. XM_006227660.5XP_006227722.1  coiled-coil domain-containing protein 28A isoform X2

      See identical proteins and their annotated locations for XP_006227722.1

      UniProtKB/TrEMBL
      A0A8I5ZQU5
      Related
      ENSRNOP00000080779.1, ENSRNOT00000106151.2
      Conserved Domains (1) summary
      pfam13270
      Location:83159
      DUF4061; Domain of unknown function (DUF4061)