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    Fam216a family with sequence similarity 216, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288667, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fam216aprovided by RGD
    Official Full Name
    family with sequence similarity 216, member Aprovided by RGD
    Primary source
    RGD:1310861
    See related
    EnsemblRapid:ENSRNOG00000031731 AllianceGenome:RGD:1310861
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310861
    Summary
    Orthologous to human FAM216A (family with sequence similarity 216 member A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 392.1), Brain (RPKM 191.0) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Fam216a in Genome Data Viewer
    Location:
    12q16
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (39859307..39868450)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (34198526..34207673)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (39679688..39688831)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex, subunit 3 Neighboring gene small nucleolar RNA SNORA67 Neighboring gene GPN-loop GTPase 3 Neighboring gene VPS29 retromer complex component Neighboring gene RAD9 checkpoint clamp component B Neighboring gene uncharacterized LOC134481297

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein FAM216A
    Names
    uncharacterized protein C12orf24 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008290.1NP_001008291.1  protein FAM216A

      See identical proteins and their annotated locations for NP_001008291.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086384
      UniProtKB/Swiss-Prot
      Q5U1Y9
      UniProtKB/TrEMBL
      A6J1A2
      Related
      ENSRNOP00000046271.2, ENSRNOT00000050398.4
      Conserved Domains (1) summary
      pfam15107
      Location:53155
      FAM216B; FAM216B protein family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      39859307..39868450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)