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    Trim30d tripartite motif-containing 30D [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499223, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Trim30dprovided by RGD
    Official Full Name
    tripartite motif-containing 30Dprovided by RGD
    Primary source
    RGD:1563970
    See related
    EnsemblRapid:ENSRNOG00000071278 AllianceGenome:RGD:1563970
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Trim30; RGD1563970
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 249.6), Thymus (RPKM 181.7) and 8 other tissues See more
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    Genomic context

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    See Trim30d in Genome Data Viewer
    Location:
    1q32
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (168207166..168225780, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (158795288..158813913, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (169521655..169540238, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing 30A like, pseudogene 1 Neighboring gene tripartite motif-containing 30C Neighboring gene G3BP stress granule assembly factor 1, pseudogene 1 Neighboring gene eukaryotic translation elongation factor 1 alpha 1, pseudogene 4 Neighboring gene olfactory receptor family 52 subfamily H member 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tripartite motif-containing protein 30A-like
    Names
    tripartite motif-containing 30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      168207166..168225780 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039101118.2 → XP_038957046.1  tripartite motif-containing protein 30A-like isoform X2

      Conserved Domains (2) summary
      COG4717
      Location:14 → 171
      YhaN; Uncharacterized protein YhaN, contains AAA domain [Function unknown]
      cl02614
      Location:138 → 341
      SPRY; SPRY domain

    2. XM_039101119.2 → XP_038957047.1  tripartite motif-containing protein 30A-like isoform X2

      Conserved Domains (2) summary
      COG4717
      Location:14 → 171
      YhaN; Uncharacterized protein YhaN, contains AAA domain [Function unknown]
      cl02614
      Location:138 → 341
      SPRY; SPRY domain

    3. XM_039101117.2 → XP_038957045.1  tripartite motif-containing protein 30A-like isoform X1

      UniProtKB/TrEMBL
      D4A0Y0
      Conserved Domains (4) summary
      COG1196
      Location:119 → 280
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16591
      Location:12 → 60
      RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
      cd19761
      Location:95 → 133
      Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins
      cl02614
      Location:288 → 491
      SPRY; SPRY domain

    4. XM_006229917.5 → XP_006229979.1  tripartite motif-containing protein 30A-like isoform X1

      UniProtKB/TrEMBL
      D4A0Y0
      Related
      ENSRNOP00000098461.1, ENSRNOT00000120849.2
      Conserved Domains (4) summary
      COG1196
      Location:119 → 280
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd16591
      Location:12 → 60
      RING-HC_TRIM5_like-C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM5, TRIM6, TRIM22, TRIM34 and similar proteins
      cd19761
      Location:95 → 133
      Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins
      cl02614
      Location:288 → 491
      SPRY; SPRY domain

    5. XM_039101121.2 → XP_038957049.1  tripartite motif-containing protein 30A-like isoform X3

      Conserved Domains (1) summary
      cl02614
      Location:44 → 247
      SPRY; SPRY domain

    RNA

    1. XR_010063121.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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