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    Ints15 integrator complex subunit 15 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 683674, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Ints15provided by RGD
    Official Full Name
    integrator complex subunit 15provided by RGD
    Primary source
    RGD:1584479
    See related
    EnsemblRapid:ENSRNOG00000024567 AllianceGenome:RGD:1584479
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be part of integrator complex. Predicted to be active in nucleus. Orthologous to human INTS15 (integrator complex subunit 15). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 60.6), Kidney (RPKM 48.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ints15 in Genome Data Viewer
    Location:
    12p11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (16358644..16373763)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (11245045..11260170)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (13299651..13313733)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481326 Neighboring gene zinc finger DHHC-type palmitoyltransferase 4 Neighboring gene uncharacterized LOC108352423 Neighboring gene zinc finger protein 853 Neighboring gene zinc finger protein 316

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of integrator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of integrator complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    integrator complex subunit 15
    Names
    uncharacterized protein C7orf26 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398880.1 → NP_001385809.1  integrator complex subunit 15

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A6K1L7
      Related
      ENSRNOP00000037318.5, ENSRNOT00000039191.5
      Conserved Domains (1) summary
      pfam14964
      Location:2 → 380
      DUF4507; Domain of unknown function (DUF4507)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      16358644..16373763
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017598485.3 → XP_017453974.1  integrator complex subunit 15 isoform X1

      UniProtKB/TrEMBL
      F1M0G5

    2. XM_039089852.2 → XP_038945780.1  integrator complex subunit 15 isoform X2

      Conserved Domains (1) summary
      pfam14964
      Location:1 → 303
      DUF4507; Domain of unknown function (DUF4507)
    Nucleotide Protein Strain
    Heading Accession and Version

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