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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001198835.2 → NP_001185764.1 cochlin isoform 2 precursor
See identical proteins and their annotated locations for NP_001185764.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC158404, AF006741, AK028690
- Consensus CDS
-
CCDS25901.1
- UniProtKB/Swiss-Prot
- Q3TAF5, Q62507, Q9QWK6
- UniProtKB/TrEMBL
-
Q3U0Z1
- Related
- ENSMUSP00000082533.6, ENSMUST00000085412.7
- Conserved Domains (3) summary
-
- smart00603
Location:32 → 114
- LCCL; LCCL domain
- cd01472
Location:368 → 529
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- cd01482
Location:166 → 330
- vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
-
NM_001409459.1 → NP_001396388.1 cochlin isoform 1 precursor
Status: VALIDATED
- Source sequence(s)
-
AC158404
- UniProtKB/TrEMBL
-
Q3U0Z1
-
NM_001409460.1 → NP_001396389.1 cochlin isoform 3 precursor
Status: VALIDATED
- Source sequence(s)
-
AC158404
- UniProtKB/TrEMBL
-
Q3U0Z1
-
NM_001409461.1 → NP_001396390.1 cochlin isoform 4 precursor
Status: VALIDATED
- Description
- Transcript Variant: Variants 4 and 5 encode isoforms of the same length that differ in their amino acid sequence.
- Source sequence(s)
-
AC158404
- UniProtKB/TrEMBL
-
Q3U0Z1
-
NM_001409462.1 → NP_001396391.1 cochlin isoform 5 precursor
Status: VALIDATED
- Description
- Transcript Variant: Variants 4 and 5 encode isoforms of the same length that differ in their amino acid sequence.
- Source sequence(s)
-
AC158404
- UniProtKB/TrEMBL
-
Q3U0Z1
-
NM_001409463.1 → NP_001396392.1 cochlin isoform 6 precursor
Status: VALIDATED
- Source sequence(s)
-
AC158404
- UniProtKB/TrEMBL
-
Q3U0Z1
-
NM_001409464.1 → NP_001396393.1 cochlin isoform 7 precursor
Status: VALIDATED
- Source sequence(s)
-
AC158404
- UniProtKB/TrEMBL
-
Q3U0Z1
-
NM_007728.6 → NP_031754.1 cochlin isoform 2 precursor
See identical proteins and their annotated locations for NP_031754.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. Variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC158404, AK028690, AK137336
- Consensus CDS
-
CCDS25901.1
- UniProtKB/Swiss-Prot
- Q3TAF5, Q62507, Q9QWK6
- UniProtKB/TrEMBL
-
Q3U0Z1
- Related
- ENSMUSP00000128127.3, ENSMUST00000164782.10
- Conserved Domains (3) summary
-
- smart00603
Location:32 → 114
- LCCL; LCCL domain
- cd01472
Location:368 → 529
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- cd01482
Location:166 → 330
- vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
RNA
-
NR_176845.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC158404
-
NR_176846.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC158404
-
NR_176847.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC158404
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000078.7 Reference GRCm39 C57BL/6J
- Range
-
51640156..51652558
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)