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    4933427D14Rik RIKEN cDNA 4933427D14 gene [ Mus musculus (house mouse) ]

    Gene ID: 74477, updated on 27-Nov-2024

    Summary

    Official Symbol
    4933427D14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4933427D14 geneprovided by MGI
    Primary source
    MGI:MGI:1921727
    See related
    Ensembl:ENSMUSG00000020807 Ensembl:ENSMUSG00000107877 AllianceGenome:MGI:1921727
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MNR; Gm43951; Kiaa0753
    Summary
    Predicted to be involved in cytosolic ciliogenesis and protein localization to centrosome. Predicted to be located in centrosome and cytosol. Predicted to be active in centriolar satellite. Is expressed in several structures, including alimentary system; brain; egg cylinder; genitourinary system; and hemolymphoid system gland. Human ortholog(s) of this gene implicated in Joubert syndrome; asphyxiating thoracic dystrophy; and orofaciodigital syndrome. Orthologous to human KIAA0753 (KIAA0753). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in CNS E18 (RPKM 7.6), CNS E14 (RPKM 7.5) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See 4933427D14Rik in Genome Data Viewer
    Location:
    11; 11 B4
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (72044755..72098308, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (72153929..72207482, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9825 Neighboring gene STARR-positive B cell enhancer ABC_E8421 Neighboring gene aryl hydrocarbon receptor-interacting protein-like 1 Neighboring gene PICALM interacting mitotic regulator Neighboring gene PITPNM family member 3 Neighboring gene predicted gene, 46286 Neighboring gene STARR-seq mESC enhancer starr_29899 Neighboring gene RIKEN cDNA 4930563E22 gene Neighboring gene STARR-positive B cell enhancer ABC_E3970 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:72029072-72029181 Neighboring gene predicted gene, 57849 Neighboring gene thioredoxin domain containing 17 Neighboring gene mediator complex subunit 31

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in centriole replication IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cilium assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cytosolic ciliogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cytosolic ciliogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in protein localization to centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in protein localization to centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in centriolar satellite IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in centriolar satellite IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in microtubule organizing center IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361564.1NP_001348493.1  protein moonraker

      Status: VALIDATED

      Source sequence(s)
      BX119911
      Consensus CDS
      CCDS24979.1
      UniProtKB/Swiss-Prot
      Q6A000, Q80XQ5, Q9CUC0
      UniProtKB/TrEMBL
      A0A0R4J1C3
      Related
      ENSMUSP00000158687.2, ENSMUST00000238653.2
      Conserved Domains (1) summary
      pfam15718
      Location:1954
      MNR; Protein moonraker
    2. NM_028963.3NP_083239.1  protein moonraker

      See identical proteins and their annotated locations for NP_083239.1

      Status: VALIDATED

      Source sequence(s)
      BX119911
      Consensus CDS
      CCDS24979.1
      UniProtKB/Swiss-Prot
      Q6A000, Q80XQ5, Q9CUC0
      UniProtKB/TrEMBL
      A0A0R4J1C3
      Related
      ENSMUSP00000104146.3, ENSMUST00000108506.10
      Conserved Domains (1) summary
      pfam15718
      Location:1954
      MNR; Protein moonraker

    RNA

    1. NR_155065.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK016946, AK041396, BC059269, BY133971
    2. NR_155066.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK016946, AK041396, BC059269, BY133971
    3. NR_155067.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC059269, BY133971
      Related
      ENSMUST00000142530.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      72044755..72098308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)