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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001282566.2 → NP_001269495.1 zinc finger CCHC domain-containing protein 17 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a).
- Source sequence(s)
-
AF247661, AK307478, BC050609, DC366453
- Consensus CDS
-
CCDS72741.1
- UniProtKB/TrEMBL
- A0A087WXF8, B4DYA9
- Related
- ENSP00000480986.1, ENST00000615916.4
- Conserved Domains (1) summary
-
- cd05686
Location:45 → 108
- S1_pNO40; S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. ...
-
NM_001282567.2 → NP_001269496.1 zinc finger CCHC domain-containing protein 17 isoform b
See identical proteins and their annotated locations for NP_001269496.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks a portion of the 5' UTR and 5' coding region, initiates translation at a downstream in-frame start codon, and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
- Source sequence(s)
-
AF247661, AK302343, AK307478, BC050609, DC366453
- Consensus CDS
-
CCDS60062.1
- UniProtKB/TrEMBL
- A0A0D9SEW3, B4DYA9
- Related
- ENSP00000486079.1, ENST00000627541.1
- Conserved Domains (1) summary
-
- cl09927
Location:1 → 62
- S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
-
NM_001282568.2 → NP_001269497.1 zinc finger CCHC domain-containing protein 17 isoform c
See identical proteins and their annotated locations for NP_001269497.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and 5' coding region, and uses an alternate start codon, compared to variant 1. The encoded isoform (c) has a distinct and shorter N-terminus, compared to isoform a. Both variants 3 and 4 encode isoform c.
- Source sequence(s)
-
AK302248, AK302343, AK307478, BC000685, BC050609, DC366453
- Consensus CDS
-
CCDS341.1
- UniProtKB/Swiss-Prot
- B4DY38, D3DPN4, Q6PKH4, Q9NP64, Q9NYG4, Q9P0M8
- UniProtKB/TrEMBL
-
B4DYA9
- Related
- ENSP00000362819.1, ENST00000373714.5
- Conserved Domains (1) summary
-
- cd05686
Location:13 → 86
- S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...
-
NM_001282569.2 → NP_001269498.1 zinc finger CCHC domain-containing protein 17 isoform d
See identical proteins and their annotated locations for NP_001269498.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and 5' coding region, and uses an alternate start codon, compared to variant 1. The encoded isoform (d) has a distinct and shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AK302248, AK307478, BC050609, DC366453
- Consensus CDS
-
CCDS60061.1
- UniProtKB/TrEMBL
-
B4DYA9
- Related
- ENSP00000444742.1, ENST00000546109.5
- Conserved Domains (1) summary
-
- cl09927
Location:15 → 78
- S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
-
NM_001282570.2 → NP_001269499.1 zinc finger CCHC domain-containing protein 17 isoform e
See identical proteins and their annotated locations for NP_001269499.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks a portion of the 5' UTR and 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (e) is shorter at the N-terminus, compared to isoform a.
- Source sequence(s)
-
AK307478, BC050609
- UniProtKB/TrEMBL
-
B4DYA9
- Conserved Domains (1) summary
-
- cl09927
Location:1 → 62
- S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
-
NM_001282571.2 → NP_001269500.1 zinc finger CCHC domain-containing protein 17 isoform f
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR and 5' coding region, and uses an alternate start codon, compared to variant 1. The encoded isoform (f) has a distinct and shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AK001929, AK302343, AK307478, BC050609, BP309837, BP371153, DC366453
- Consensus CDS
-
CCDS72744.1
- UniProtKB/TrEMBL
-
A0A087WYV3
- Related
- ENSP00000482122.1, ENST00000616393.4
-
NM_001282572.2 → NP_001269501.1 zinc finger CCHC domain-containing protein 17 isoform g
See identical proteins and their annotated locations for NP_001269501.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) differs in the 5' UTR and 5' coding region, uses an alternate start codon, and lacks two exons that result in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (g) has distinct N- and C-termini and is shorter than isoform a.
- Source sequence(s)
-
AK001929, AK302343, AK307478, BC050609, BF309574
- UniProtKB/Swiss-Prot
-
Q9NP64
- UniProtKB/TrEMBL
-
B4DYA9
- Conserved Domains (1) summary
-
- cd05686
Location:13 → 86
- S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...
-
NM_001282573.2 → NP_001269502.1 zinc finger CCHC domain-containing protein 17 isoform h
See identical proteins and their annotated locations for NP_001269502.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) differs in the 5' UTR and 5' coding region, uses an alternate start codon, and lacks two exons that result in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (h) has distinct N- and C-termini and is shorter than isoform a.
- Source sequence(s)
-
AK001929, AK302343, AK307478, BC050609, DA737244
- Consensus CDS
-
CCDS72743.1
- UniProtKB/TrEMBL
-
A0A087WYF0
- Related
- ENSP00000481743.1, ENST00000616859.4
- Conserved Domains (1) summary
-
- cl09927
Location:15 → 78
- S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
-
NM_001282574.2 → NP_001269503.1 zinc finger CCHC domain-containing protein 17 isoform i
See identical proteins and their annotated locations for NP_001269503.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (10) differs in the 5' UTR and 5' coding region, uses an alternate start codon, and lacks an exon that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (i) has distinct N- and C-termini and is shorter than isoform a.
- Source sequence(s)
-
AK001929, AK302343, AK307478, BC050609, CN423139, DC366453
- Consensus CDS
-
CCDS72742.1
- UniProtKB/TrEMBL
-
A0A087WXU5
- Related
- ENSP00000481299.1, ENST00000618216.4
- Conserved Domains (1) summary
-
- cd05686
Location:13 → 86
- S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...
-
NM_016505.4 → NP_057589.2 zinc finger CCHC domain-containing protein 17 isoform c
See identical proteins and their annotated locations for NP_057589.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and 5' coding region, and uses an alternate start codon, compared to variant 1. The encoded isoform (c) has a distinct and shorter N-terminus, compared to isoform a. Both variants 3 and 4 encode isoform c.
- Source sequence(s)
-
AK001929, AK302343, AK307478, BC050609
- Consensus CDS
-
CCDS341.1
- UniProtKB/Swiss-Prot
- B4DY38, D3DPN4, Q6PKH4, Q9NP64, Q9NYG4, Q9P0M8
- UniProtKB/TrEMBL
-
B4DYA9
- Related
- ENSP00000343557.5, ENST00000344147.10
- Conserved Domains (1) summary
-
- cd05686
Location:13 → 86
- S1_pNO40; pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
31297032..31364936
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047422508.1 → XP_047278464.1 zinc finger CCHC domain-containing protein 17 isoform X1
- UniProtKB/Swiss-Prot
- B4DY38, D3DPN4, Q6PKH4, Q9NP64, Q9NYG4, Q9P0M8
- UniProtKB/TrEMBL
-
B4DYA9
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
31149209..31217206
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054336976.1 → XP_054192951.1 zinc finger CCHC domain-containing protein 17 isoform X1
- UniProtKB/Swiss-Prot
- B4DY38, D3DPN4, Q6PKH4, Q9NP64, Q9NYG4, Q9P0M8
- UniProtKB/TrEMBL
-
B4DYA9