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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_030368.2 RefSeqGene
- Range
-
5000..82579
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001130698.2 → NP_001124170.1 short transient receptor potential channel 3 isoform a
See identical proteins and their annotated locations for NP_001124170.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (a).
- Source sequence(s)
-
AC079341, AC108930, AY865574, Y13758
- Consensus CDS
-
CCDS47130.1
- UniProtKB/Swiss-Prot
- A7VJS1, E9PCJ9, O00593, Q13507, Q15660, Q52M35, Q5G1L5
- UniProtKB/TrEMBL
-
J3QTB0
- Related
- ENSP00000368966.3, ENST00000379645.8
- Conserved Domains (4) summary
-
- cd00204
Location:119 → 253
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- TIGR00870
Location:96 → 890
- trp; transient-receptor-potential calcium channel protein
- pfam08344
Location:267 → 326
- TRP_2; Transient receptor ion channel II
- sd00045
Location:146 → 177
- ANK; ANK repeat [structural motif]
-
NM_001366479.2 → NP_001353408.1 short transient receptor potential channel 3 isoform e
Status: REVIEWED
- Source sequence(s)
-
AC079341, AC108930
- UniProtKB/TrEMBL
-
J3QTB0
- Conserved Domains (2) summary
-
- TIGR00870
Location:96 → 862
- trp; transient-receptor-potential calcium channel protein
- sd00045
Location:146 → 177
- ANK; ANK repeat [structural motif]
-
NM_003305.2 → NP_003296.1 short transient receptor potential channel 3 isoform b
See identical proteins and their annotated locations for NP_003296.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an upstream exon , compared to variant 1, resulting in a different 5' UTR and 5' coding region and translation initiation from an inframe, downstream ATG. The encoded protein (isoform b) has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AY865574, Y13758
- Consensus CDS
-
CCDS3725.1
- UniProtKB/TrEMBL
-
J3QTB0
- Related
- ENSP00000264811.5, ENST00000264811.9
- Conserved Domains (2) summary
-
- TIGR00870
Location:23 → 817
- trp; transient-receptor-potential calcium channel protein
- sd00045
Location:73 → 104
- ANK; ANK repeat [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
121874481..121952060 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011532218.4 → XP_011530520.1 short transient receptor potential channel 3 isoform X3
- UniProtKB/TrEMBL
-
J3QTB0
- Conserved Domains (4) summary
-
- cd00204
Location:119 → 253
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- TIGR00870
Location:96 → 889
- trp; transient-receptor-potential calcium channel protein
- pfam08344
Location:267 → 326
- TRP_2; Transient receptor ion channel II
- sd00045
Location:146 → 177
- ANK; ANK repeat [structural motif]
-
XM_017008578.3 → XP_016864067.1 short transient receptor potential channel 3 isoform X2
- UniProtKB/TrEMBL
-
J3QTB0
-
XM_011532217.4 → XP_011530519.1 short transient receptor potential channel 3 isoform X1
- UniProtKB/TrEMBL
-
J3QTB0
- Conserved Domains (4) summary
-
- cd00204
Location:119 → 253
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- TIGR00870
Location:96 → 906
- trp; transient-receptor-potential calcium channel protein
- pfam08344
Location:267 → 326
- TRP_2; Transient receptor ion channel II
- sd00045
Location:146 → 177
- ANK; ANK repeat [structural motif]
-
XM_047416117.1 → XP_047272073.1 short transient receptor potential channel 3 isoform X5
- UniProtKB/TrEMBL
-
J3QTB0
-
XM_047416116.1 → XP_047272072.1 short transient receptor potential channel 3 isoform X4
- UniProtKB/TrEMBL
-
J3QTB0
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
125178529..125256098 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054350770.1 → XP_054206745.1 short transient receptor potential channel 3 isoform X3
- UniProtKB/TrEMBL
-
J3QTB0
-
XM_054350769.1 → XP_054206744.1 short transient receptor potential channel 3 isoform X2
- UniProtKB/TrEMBL
-
J3QTB0
-
XM_054350768.1 → XP_054206743.1 short transient receptor potential channel 3 isoform X1
- UniProtKB/TrEMBL
-
J3QTB0
-
XM_054350772.1 → XP_054206747.1 short transient receptor potential channel 3 isoform X5
- UniProtKB/TrEMBL
-
J3QTB0
-
XM_054350771.1 → XP_054206746.1 short transient receptor potential channel 3 isoform X4
- UniProtKB/TrEMBL
-
J3QTB0