U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    H2ac25 H2A clustered histone 25 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 64646, updated on 27-Nov-2024

    Summary

    Official Symbol
    H2ac25provided by RGD
    Official Full Name
    H2A clustered histone 25provided by RGD
    Primary source
    RGD:621437
    See related
    EnsemblRapid:ENSRNOG00000064520 AllianceGenome:RGD:621437
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    H2a; Hist3h2a
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in UV-damage excision repair and nucleosome disassembly. Predicted to be part of nucleosome. Orthologous to human H2AC25 (H2A clustered histone 25). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See H2ac25 in Genome Data Viewer
    Location:
    10q22
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (44233283..44234835)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (43733702..43735254)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (45297603..45299155)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene histone cluster 3, H2ba Neighboring gene H2B.U histone 1 Neighboring gene H3.4 histone, cluster member Neighboring gene tripartite motif-containing 17 Neighboring gene uncharacterized LOC102555997

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC116285

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in UV-damage excision repair ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in heterochromatin formation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in nucleosome disassembly ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of nucleosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of nucleosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    histone H2A type 3
    Names
    histone 2a
    histone 3, H2a
    histone cluster 3, H2a

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021840.2NP_068612.2  histone H2A type 3

      See identical proteins and their annotated locations for NP_068612.2

      Status: PROVISIONAL

      Source sequence(s)
      BC099140
      UniProtKB/Swiss-Prot
      Q4FZT6, Q64598
      UniProtKB/TrEMBL
      A6HEW5
      Related
      ENSRNOP00000060549.3, ENSRNOT00000066367.5
      Conserved Domains (1) summary
      PTZ00017
      Location:1130
      PTZ00017; histone H2A; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      44233283..44234835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)