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    Fam90a1b family with sequence similarity 90, member A1B [ Mus musculus (house mouse) ]

    Gene ID: 631145, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fam90a1bprovided by MGI
    Official Full Name
    family with sequence similarity 90, member A1Bprovided by MGI
    Primary source
    MGI:MGI:1921682
    See related
    Ensembl:ENSMUSG00000043549 Ensembl:ENSMUSG00000118554 AllianceGenome:MGI:1921682
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CXorf58; 4932442L08Rik
    Summary
    Orthologous to several human genes including FAM90A1 (family with sequence similarity 90 member A1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in placenta adult (RPKM 1.5), testis adult (RPKM 0.3) and 1 other tissue See more
    Orthologs
    human all
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    Genomic context

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    See Fam90a1b in Genome Data Viewer
    Location:
    X C3; X 41.56 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (93383509..93410513, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (94339903..94366909, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 14826 Neighboring gene cell division cycle associated 5 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E11051 Neighboring gene apolipoprotein O Neighboring gene M phase phosphoprotein 6 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC141327

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein CXorf58 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362881.1 → NP_001349810.1  uncharacterized protein CXorf58 homolog

      Status: VALIDATED

      Source sequence(s)
      AL627302, AL646049
      Consensus CDS
      CCDS90736.1
      UniProtKB/Swiss-Prot
      A0A5F8MPE6
      Related
      ENSMUSP00000158935.2, ENSMUST00000239046.2
      Conserved Domains (1) summary
      cd21090
      Location:39 → 118
      C11orf65; chromosome 11 open reading frame 65 and homologs

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      93383509..93410513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030251470.2 → XP_030107330.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle

    2. XM_030251467.2 → XP_030107327.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle

    3. XM_030251469.2 → XP_030107329.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle

    4. XM_030251464.2 → XP_030107324.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle

    5. XM_030251465.2 → XP_030107325.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Related
      ENSMUSP00000043958.6, ENSMUST00000044989.12
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle

    6. XM_030251471.2 → XP_030107331.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Related
      ENSMUSP00000109536.2, ENSMUST00000113903.8
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle

    7. XM_030251472.1 → XP_030107332.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle

    8. XM_030251468.1 → XP_030107328.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle

    9. XM_030251466.1 → XP_030107326.1  uncharacterized protein CXorf58 homolog isoform X1

      UniProtKB/TrEMBL
      Q1RLL7, Q9D4F3
      Conserved Domains (1) summary
      pfam15288
      Location:33 → 68
      zf-CCHC_6; Zinc knuckle
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A5F8MPE6.1 GenPept UniProtKB/Swiss-Prot:A0A5F8MPE6

    Gene LinkOut

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    Research Materials