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    Ccdc152 coiled-coil domain containing 152 [ Mus musculus (house mouse) ]

    Gene ID: 100039139, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc152provided by MGI
    Official Full Name
    coiled-coil domain containing 152provided by MGI
    Primary source
    MGI:MGI:3641617
    See related
    Ensembl:ENSMUSG00000091119 AllianceGenome:MGI:3641617
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human CCDC152 (coiled-coil domain containing 152). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc152 in Genome Data Viewer
    Location:
    15 A1; 15 1.84 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (3309725..3334209, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (3280099..3303526, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_37812 Neighboring gene Ewing sarcoma breakpoint region 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_37813 Neighboring gene predicted gene, 30057 Neighboring gene selenoprotein P Neighboring gene predicted gene, 41254 Neighboring gene growth hormone receptor Neighboring gene Ghr downstream L1 promoter region Neighboring gene Ghr upstream L2 promoter region Neighboring gene predicted gene, 22031

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 152

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166063.3 → NP_001159535.1  coiled-coil domain-containing protein 152 isoform 1

      See identical proteins and their annotated locations for NP_001159535.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AC166491
      Consensus CDS
      CCDS49571.1
      UniProtKB/TrEMBL
      E9PX14
      Related
      ENSMUSP00000129305.2, ENSMUST00000165386.2
      Conserved Domains (1) summary
      NF033930
      Location:74 → 247
      pneumo_PspA; pneumococcal surface protein A

    2. NM_001357801.2 → NP_001344730.1  coiled-coil domain-containing protein 152 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      AC166491
      UniProtKB/TrEMBL
      A0A2I3BPP3
      Related
      ENSMUSP00000153740.2, ENSMUST00000228405.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      3309725..3334209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159046.1 → XP_036014939.1  coiled-coil domain-containing protein 152 isoform X4

      UniProtKB/TrEMBL
      A0A2I3BPP3

    2. XM_036159043.1 → XP_036014936.1  coiled-coil domain-containing protein 152 isoform X2

      UniProtKB/TrEMBL
      A0A2I3BPP3

    3. XM_036159047.1 → XP_036014940.1  coiled-coil domain-containing protein 152 isoform X5

      UniProtKB/TrEMBL
      E9PX14
      Conserved Domains (1) summary
      NF033930
      Location:74 → 247
      pneumo_PspA; pneumococcal surface protein A

    4. XM_036159045.1 → XP_036014938.1  coiled-coil domain-containing protein 152 isoform X3

    5. XM_030248253.2 → XP_030104113.1  coiled-coil domain-containing protein 152 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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