U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Slc5a2 solute carrier family 5 (sodium/glucose cotransporter), member 2 [ Mus musculus (house mouse) ]

    Gene ID: 246787, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slc5a2provided by MGI
    Official Full Name
    solute carrier family 5 (sodium/glucose cotransporter), member 2provided by MGI
    Primary source
    MGI:MGI:2181411
    See related
    Ensembl:ENSMUSG00000030781 AllianceGenome:MGI:2181411
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sglt2
    Summary
    Predicted to enable D-glucose:sodium symporter activity and alpha-glucoside transmembrane transporter activity. Involved in renal D-glucose absorption. Located in apical plasma membrane. Is expressed in urinary system. Human ortholog(s) of this gene implicated in renal glycosuria. Orthologous to human SLC5A2 (solute carrier family 5 member 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in kidney adult (RPKM 372.3) and adrenal adult (RPKM 11.1) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slc5a2 in Genome Data Viewer
    Location:
    7 F3; 7 70.08 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (127864855..127871602)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (128265683..128272430)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:135380811-135380920 Neighboring gene STARR-positive B cell enhancer ABC_E2253 Neighboring gene STARR-positive B cell enhancer ABC_E8212 Neighboring gene zinc finger protein 696 Neighboring gene armadillo repeat containing 5 Neighboring gene transforming growth factor beta 1 induced transcript 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:135396171-135396397 Neighboring gene RUS family member 1 Neighboring gene microRNA 3103 Neighboring gene alpha hemoglobin stabilizing protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables D-glucose transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables D-glucose:sodium symporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables D-glucose:sodium symporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables D-glucose:sodium symporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables alpha-glucoside transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables alpha-glucoside transmembrane transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in D-glucose import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in D-glucose import across plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in D-glucose transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in alpha-glucoside transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in alpha-glucoside transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of urine volume ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in renal D-glucose absorption IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in renal potassium excretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sodium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sodium ion import across plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sodium ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in brush border membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    sodium/glucose cotransporter 2
    Names
    Na(+)/glucose cotransporter 2
    low affinity sodium-dependent glucose cotransporter

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133254.5NP_573517.1  sodium/glucose cotransporter 2

      See identical proteins and their annotated locations for NP_573517.1

      Status: VALIDATED

      Source sequence(s)
      AC124566
      Consensus CDS
      CCDS21894.1
      UniProtKB/Swiss-Prot
      Q923I7
      Related
      ENSMUSP00000112597.2, ENSMUST00000118169.8
      Conserved Domains (1) summary
      cl00456
      Location:22670
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      127864855..127871602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)