U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Speer4b spermatogenesis associated glutamate (E)-rich protein 4B [ Mus musculus (house mouse) ]

    Gene ID: 73526, updated on 27-Nov-2024

    Summary

    Official Symbol
    Speer4bprovided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 4Bprovided by MGI
    Primary source
    MGI:MGI:1920776
    See related
    Ensembl:ENSMUSG00000048703 AllianceGenome:MGI:1920776
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SPEER-4B; 1700081O22Rik
    Expression
    Biased expression in testis adult (RPKM 3.7), ovary adult (RPKM 0.9) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Speer4b in Genome Data Viewer
    Location:
    5 B1; 5 13.23 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (27700807..27706390, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (27495809..27501392, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930584F24 gene Neighboring gene STARR-seq mESC enhancer starr_12680 Neighboring gene STARR-seq mESC enhancer starr_12681 Neighboring gene STARR-seq mESC enhancer starr_12682 Neighboring gene STARR-seq mESC enhancer starr_12683 Neighboring gene STARR-seq mESC enhancer starr_12685 Neighboring gene STARR-seq mESC enhancer starr_12686 Neighboring gene STARR-seq mESC enhancer starr_12689 Neighboring gene nucleoside diphosphate kinase B pseudogene Neighboring gene Dpp6 Hedgehog-responsive enhancer Neighboring gene dipeptidylpeptidase 6 Neighboring gene STARR-seq mESC enhancer starr_12691 Neighboring gene STARR-seq mESC enhancer starr_12692 Neighboring gene STARR-seq mESC enhancer starr_12693 Neighboring gene STARR-seq mESC enhancer starr_12699 Neighboring gene STARR-seq mESC enhancer starr_12703 Neighboring gene STARR-seq mESC enhancer starr_12704 Neighboring gene STARR-seq mESC enhancer starr_12705 Neighboring gene STARR-seq mESC enhancer starr_12706 Neighboring gene predicted gene 16058 Neighboring gene STARR-positive B cell enhancer ABC_E3565 Neighboring gene PAX interacting (with transcription-activation domain) protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    spermatogenesis associated glutamate (E)-rich protein 4b
    Names
    sperm-associated glutamate (E)-rich protein 4b
    spermatogenic-associated glutamate (E)-rich protein 4b

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028561.2NP_082837.1  spermatogenesis associated glutamate (E)-rich protein 4b

      See identical proteins and their annotated locations for NP_082837.1

      Status: VALIDATED

      Source sequence(s)
      AK006975, BC119075
      Consensus CDS
      CCDS19140.1
      UniProtKB/TrEMBL
      D3YW71, D3Z2I7, D3Z6H2, D3Z7H5, E0CZ92, E9Q274, F6YG40, Q9D9F7
      Related
      ENSMUSP00000062903.4, ENSMUST00000053257.10
      Conserved Domains (2) summary
      pfam04822
      Location:52133
      Takusan; Takusan
      cl14876
      Location:168231
      Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      27700807..27706390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)