U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    1700067K01Rik RIKEN cDNA 1700067K01 gene [ Mus musculus (house mouse) ]

    Gene ID: 73453, updated on 9-Dec-2024

    Summary

    Official Symbol
    1700067K01Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700067K01 geneprovided by MGI
    Primary source
    MGI:MGI:1920703
    See related
    Ensembl:ENSMUSG00000046408 AllianceGenome:MGI:1920703
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Acts upstream of or within in utero embryonic development. Orthologous to human C19orf67 (chromosome 19 open reading frame 67). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 8.8), kidney adult (RPKM 1.5) and 5 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 1700067K01Rik in Genome Data Viewer
    Location:
    8 C2; 8 40.24 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (84727145..84731399)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (84000516..84004770)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene protein kinase, cAMP dependent, catalytic, alpha Neighboring gene STARR-seq mESC enhancer starr_22104 Neighboring gene sterile alpha motif domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E882 Neighboring gene microRNA 8111 Neighboring gene microRNA 1199 Neighboring gene MISP family member 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General protein information

    Preferred Names
    UPF0575 protein C19orf67 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183097.3NP_898920.3  UPF0575 protein C19orf67 homolog

      Status: VALIDATED

      Source sequence(s)
      AC156028
      Consensus CDS
      CCDS22464.2
      UniProtKB/Swiss-Prot
      F6UZF9, Q8CF25
      UniProtKB/TrEMBL
      A0A668KLB1
      Related
      ENSMUSP00000159263.2, ENSMUST00000239176.2
      Conserved Domains (1) summary
      pfam11771
      Location:176332
      DUF3314; Protein of unknown function (DUF3314)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      84727145..84731399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531403.3XP_006531466.1  UPF0575 protein C19orf67 homolog isoform X1

      See identical proteins and their annotated locations for XP_006531466.1

      UniProtKB/Swiss-Prot
      F6UZF9, Q8CF25
      UniProtKB/TrEMBL
      A0A6E0D3Q4
      Related
      ENSMUSP00000062468.9, ENSMUST00000060357.15
      Conserved Domains (1) summary
      pfam11771
      Location:177333
      DUF3314; Protein of unknown function (DUF3314)