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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_016680.5 → NP_057889.3 CLK4-associating serine/arginine rich protein
See identical proteins and their annotated locations for NP_057889.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (L, PMID:12169693) represents the shortest transcript and encodes the protein.
- Source sequence(s)
-
BC051916, BC060092, CJ146179
- Consensus CDS
-
CCDS52061.1
- UniProtKB/Swiss-Prot
- Q5RKW4, Q8CFC7, Q8CFC8, Q9Z2N3
- Related
- ENSMUSP00000083205.6, ENSMUST00000086041.7
- Conserved Domains (1) summary
-
- pfam09750
Location:41 → 169
- DRY_EERY; Alternative splicing regulator
RNA
-
NR_125832.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (S, PMID: 12169693) uses an alternate splice site in an internal exon, compared to variant L. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant L, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC051916, BC060092, CJ146179
- Related
-
ENSMUST00000208068.2
-
NR_125833.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has multiple differences in its internal exons, compared to variant L. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant L, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC051916, BC060092, BC103781, BY591198, CJ146179
- Related
-
ENSMUST00000207524.2
-
NR_125834.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) contains an alternate internal exon segment, compared to variant L. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant L, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK009334, BC051916, BC060092, CJ146179
-
NR_125835.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) contains an alternate 5' terminal exon and contains an alternate internal exon segment, compared to variant L. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant L, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AF042799, BC060092
- Related
-
ENSMUST00000207907.2
-
NR_125836.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) has multiple differences in its internal exons, compared to variant L. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant L, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC060092, BC103781, CJ146179
- Related
-
ENSMUST00000207663.2