HPN-AS1 HPN antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: HPN-AS1provided by HGNC
Official Full Name: HPN antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:47041
See related: Ensembl:ENSG00000227392 AllianceGenome:HGNC:47041
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information: Note: The gene type is uncertain. There is scant homology support for predicted proteins and so the locus is represented as non-protein-coding at this time. [09 Dec 2008]
Expression: Biased expression in kidney (RPKM 1.7), liver (RPKM 1.7) and 7 other tissues See more
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Genomic context

Location:: 19q13.11-q13.12

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	19	NC_000019.10 (35059059..35106304, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	19	NC_060943.1 (37603678..37650929, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	19	NC_000019.9 (35549963..35597208, complement)

Chromosome 19 - NC_000019.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Tissue-specific circular RNA induction during human fetal development
Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
BioProject: PRJNA270632
Publication: PMID 26076956
Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Observational study and genome-wide association study of gene-disease association. (HuGE Navigator)
Title: Host determinants of HIV-1 control in African Americans.

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Discovery and fine mapping of serum protein loci through transethnic meta-analysis. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

D1S3531 (e-PCR)
- UniSTS:3866

D11S2560 (e-PCR)
- UniSTS:37928

D19S1003 (e-PCR)
- UniSTS:43355

SHGC-67307 (e-PCR)
- UniSTS:89991

D19S893 (e-PCR)
- UniSTS:5825

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

NR_024561.1 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript.

Source sequence(s)

AC020907
NR_024562.1 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (2) differs in two exons relative to variant 1 and is a shorter transcript.

Source sequence(s)

AC020907

Related

ENST00000392227.2