TRIM65 tripartite motif containing 65 [Homo sapiens (human)] - Gene

Summary

Official Symbol: TRIM65provided by HGNC
Official Full Name: tripartite motif containing 65provided by HGNC
Primary source: HGNC:HGNC:27316
See related: Ensembl:ENSG00000141569 MIM:619408; AllianceGenome:HGNC:27316
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: 4732463G12Rik
Summary: Enables ubiquitin protein ligase activity. Involved in negative regulation of inflammatory response; positive regulation of metabolic process; and protein polyubiquitination. Located in cytosol and nucleoplasm. Is active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
Expression: Ubiquitous expression in spleen (RPKM 5.1), lung (RPKM 4.3) and 25 other tissues See more
Orthologs: mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 17q25.1

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	17	NC_000017.11 (75879537..75896951, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	17	NC_060941.1 (76771866..76790102, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	17	NC_000017.10 (73885044..73893032, complement)

Chromosome 17 - NC_000017.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Tissue-specific circular RNA induction during human fetal development
Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
BioProject: PRJNA270632
Publication: PMID 26076956
Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

TRIM65 Suppresses oxLDL-induced Endothelial Inflammation by Interaction with VCAM-1 in Atherogenesis.
Title: TRIM65 Suppresses oxLDL-induced Endothelial Inflammation by Interaction with VCAM-1 in Atherogenesis.
TRIM65/NF2/YAP1 Signaling Coordinately Orchestrates Metabolic and Immune Advantages in Hepatocellular Carcinoma.
Title: TRIM65/NF2/YAP1 Signaling Coordinately Orchestrates Metabolic and Immune Advantages in Hepatocellular Carcinoma.
Tripartite Motif-Containing Protein 65 (TRIM65) Inhibits Hepatitis B Virus Transcription.
Title: Tripartite Motif-Containing Protein 65 (TRIM65) Inhibits Hepatitis B Virus Transcription.
TRIM65 promotes vascular smooth muscle cell phenotypic transformation by activating PI3K/Akt/mTOR signaling during atherogenesis.
Title: TRIM65 promotes vascular smooth muscle cell phenotypic transformation by activating PI3K/Akt/mTOR signaling during atherogenesis.
TRIM65 knockout inhibits the development of HCC by polarization tumor-associated macrophages towards M1 phenotype via JAK1/STAT1 signaling pathway.
Title: TRIM65 knockout inhibits the development of HCC by polarization tumor-associated macrophages towards M1 phenotype via JAK1/STAT1 signaling pathway.
TRIM65 Promotes Malignant Cell Behaviors in Triple-Negative Breast Cancer by Impairing the Stability of LATS1 Protein.
Title: TRIM65 Promotes Malignant Cell Behaviors in Triple-Negative Breast Cancer by Impairing the Stability of LATS1 Protein.
TRIM65 determines the fate of a novel subtype of pituitary neuroendocrine tumors via ubiquitination and degradation of TPIT.
Title: TRIM65 determines the fate of a novel subtype of pituitary neuroendocrine tumors via ubiquitination and degradation of TPIT.
Knockdown of TRIM65 suppressed the proliferation and invasiveness of gastric cancer cells by restricting the ubiquitin degradation of PPM1A.
Title: Knockdown of TRIM65 suppressed the proliferation and invasiveness of gastric cancer cells by restricting the ubiquitin degradation of PPM1A.
TRIM65 in White Matter Lesions, Innate Immunity, and Tumor.
Title: TRIM65 in White Matter Lesions, Innate Immunity, and Tumor.
LncRNA LINC00963 promotes colorectal cancer cell proliferation and metastasis by regulating miR1281 and TRIM65.
Title: LncRNA LINC00963 promotes colorectal cancer cell proliferation and metastasis by regulating miR‑1281 and TRIM65.

Submit: New GeneRIF Correction See all GeneRIFs (25)

Phenotypes

Go to the top of the page Help

Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association studies of cerebral white matter lesion burden: the CHARGE consortium. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Markers

G65616 (e-PCR)
- UniSTS:225552

SHGC-132666 (e-PCR)
- UniSTS:185381

RH79813 (e-PCR)
- UniSTS:92198

SHGC-155088 (e-PCR)
- UniSTS:183084

D8S2279 (e-PCR)
- UniSTS:473907

D15S1477 (e-PCR)
- UniSTS:474482

D17S1475E (e-PCR)
- UniSTS:151682

D11S3114 (e-PCR)
- UniSTS:152207

SHGC-37061 (e-PCR)
- UniSTS:5788

RH78964 (e-PCR)
- UniSTS:28121

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables ubiquitin protein ligase activity	IDA Inferred from Direct Assay more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in antiviral innate immune response	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of inflammatory response	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of autophagy	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of autophagy	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of interferon-alpha production	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of interferon-beta production	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of protein oligomerization	IEA Inferred from Electronic Annotation more info
involved_in protein K48-linked ubiquitination	IDA Inferred from Direct Assay more info	PubMed
involved_in protein K63-linked ubiquitination	IDA Inferred from Direct Assay more info	PubMed
involved_in type I interferon-mediated signaling pathway	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	IDA Inferred from Direct Assay more info
located_in nucleoplasm	IDA Inferred from Direct Assay more info

General protein information

Go to the top of the page Help

Preferred Names: E3 ubiquitin-protein ligase TRIM65

Names: tripartite motif-containing protein 65

NP_001243053.1

EC 2.3.2.27

NP_775818.2

EC 2.3.2.27

XP_006721823.1

EC 2.3.2.27

XP_006721824.1

EC 2.3.2.27

XP_011522801.1

EC 2.3.2.27

XP_011522802.1

EC 2.3.2.27

XP_011522803.1

EC 2.3.2.27

XP_011522804.1

EC 2.3.2.27

XP_011522805.1

EC 2.3.2.27

XP_016879833.1

EC 2.3.2.27

XP_047291536.1

EC 2.3.2.27

XP_047291537.1

EC 2.3.2.27

XP_047291539.1

EC 2.3.2.27

XP_047291540.1

EC 2.3.2.27

XP_047291541.1

EC 2.3.2.27

XP_054171375.1

EC 2.3.2.27

XP_054171376.1

EC 2.3.2.27

XP_054171377.1

EC 2.3.2.27

XP_054171378.1

EC 2.3.2.27

XP_054171379.1

EC 2.3.2.27

XP_054171380.1

EC 2.3.2.27

XP_054171381.1

EC 2.3.2.27

XP_054171382.1

EC 2.3.2.27

XP_054171383.1

EC 2.3.2.27

XP_054171384.1

EC 2.3.2.27

XP_054171385.1

EC 2.3.2.27

XP_054171386.1

EC 2.3.2.27

XP_054171387.1

EC 2.3.2.27

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001256124.2 → NP_001243053.1 E3 ubiquitin-protein ligase TRIM65 isoform 2

See identical proteins and their annotated locations for NP_001243053.1

Status: VALIDATED

Description

Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.

Source sequence(s)

AC087289, BC021259, BG701649, BG753016, DR002345

UniProtKB/Swiss-Prot

Q6PJ69

Conserved Domains (4) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

pfam15898
Location:123 → 173

PRKG1_interact; cGMP-dependent protein kinase interacting domain

cd12896
Location:307 → 479

SPRY_PRY_TRIM65; PRY/SPRY domain in tripartite motif-containing domain 65 (TRIM65)
NM_173547.4 → NP_775818.2 E3 ubiquitin-protein ligase TRIM65 isoform 1

See identical proteins and their annotated locations for NP_775818.2

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).

Source sequence(s)

AC087289, AI242308, BC021259

Consensus CDS

CCDS11732.1

UniProtKB/Swiss-Prot

Q4G0F0, Q6DKJ6, Q6PJ69, Q9BRP6

Related

ENSP00000269383.3, ENST00000269383.8

Conserved Domains (4) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

pfam15898
Location:123 → 173

PRKG1_interact; cGMP-dependent protein kinase interacting domain

cd12896
Location:322 → 501

SPRY_PRY_TRIM65; PRY/SPRY domain in tripartite motif-containing domain 65 (TRIM65)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000017.11 Reference GRCh38.p14 Primary Assembly

Range

75879537..75896951 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_047435584.1 → XP_047291540.1 E3 ubiquitin-protein ligase TRIM65 isoform X10
XM_047435583.1 → XP_047291539.1 E3 ubiquitin-protein ligase TRIM65 isoform X7
XM_011524501.3 → XP_011522803.1 E3 ubiquitin-protein ligase TRIM65 isoform X8

Conserved Domains (3) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cl02614
Location:320 → 362

SPRY; SPRY domain
XM_011524499.3 → XP_011522801.1 E3 ubiquitin-protein ligase TRIM65 isoform X5

Conserved Domains (3) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cl02614
Location:335 → 384

SPRY; SPRY domain
XM_011524502.3 → XP_011522804.1 E3 ubiquitin-protein ligase TRIM65 isoform X9

Conserved Domains (3) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cl02614
Location:320 → 353

SPRY; SPRY domain
XM_011524500.3 → XP_011522802.1 E3 ubiquitin-protein ligase TRIM65 isoform X6

Conserved Domains (3) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cl02614
Location:335 → 375

SPRY; SPRY domain
XM_047435585.1 → XP_047291541.1 E3 ubiquitin-protein ligase TRIM65 isoform X11
XM_017024344.2 → XP_016879833.1 E3 ubiquitin-protein ligase TRIM65 isoform X13

UniProtKB/TrEMBL

H0YGS7

Related

ENSP00000444607.1, ENST00000540128.1

Conserved Domains (2) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
XM_047435581.1 → XP_047291537.1 E3 ubiquitin-protein ligase TRIM65 isoform X2
XM_011524503.3 → XP_011522805.1 E3 ubiquitin-protein ligase TRIM65 isoform X12

UniProtKB/TrEMBL

H0YGS7

Conserved Domains (2) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
XM_006721761.4 → XP_006721824.1 E3 ubiquitin-protein ligase TRIM65 isoform X4

Conserved Domains (3) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cd12896
Location:320 → 492

SPRY_PRY_TRIM65; PRY/SPRY domain in tripartite motif-containing domain 65 (TRIM65)
XM_006721760.4 → XP_006721823.1 E3 ubiquitin-protein ligase TRIM65 isoform X3

Conserved Domains (3) summary

cd00021
Location:94 → 130

BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.

cd00162
Location:11 → 54

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cd12896
Location:335 → 514

SPRY_PRY_TRIM65; PRY/SPRY domain in tripartite motif-containing domain 65 (TRIM65)
XM_047435580.1 → XP_047291536.1 E3 ubiquitin-protein ligase TRIM65 isoform X1

RNA

XR_934419.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

NC_060941.1 Alternate T2T-CHM13v2.0

Range

76771866..76790102 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054315409.1 → XP_054171384.1 E3 ubiquitin-protein ligase TRIM65 isoform X10
XM_054315406.1 → XP_054171381.1 E3 ubiquitin-protein ligase TRIM65 isoform X7
XM_054315407.1 → XP_054171382.1 E3 ubiquitin-protein ligase TRIM65 isoform X8
XM_054315404.1 → XP_054171379.1 E3 ubiquitin-protein ligase TRIM65 isoform X5
XM_054315408.1 → XP_054171383.1 E3 ubiquitin-protein ligase TRIM65 isoform X9
XM_054315405.1 → XP_054171380.1 E3 ubiquitin-protein ligase TRIM65 isoform X6
XM_054315410.1 → XP_054171385.1 E3 ubiquitin-protein ligase TRIM65 isoform X11
XM_054315412.1 → XP_054171387.1 E3 ubiquitin-protein ligase TRIM65 isoform X13

UniProtKB/TrEMBL

H0YGS7
XM_054315401.1 → XP_054171376.1 E3 ubiquitin-protein ligase TRIM65 isoform X2
XM_054315411.1 → XP_054171386.1 E3 ubiquitin-protein ligase TRIM65 isoform X12

UniProtKB/TrEMBL

H0YGS7
XM_054315403.1 → XP_054171378.1 E3 ubiquitin-protein ligase TRIM65 isoform X4
XM_054315402.1 → XP_054171377.1 E3 ubiquitin-protein ligase TRIM65 isoform X3
XM_054315400.1 → XP_054171375.1 E3 ubiquitin-protein ligase TRIM65 isoform X1