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    LINC00545 long intergenic non-protein coding RNA 545 [ Homo sapiens (human) ]

    Gene ID: 440132, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00545provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 545provided by HGNC
    Primary source
    HGNC:HGNC:43680
    See related
    AllianceGenome:HGNC:43680
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00545 in Genome Data Viewer
    Location:
    13q12.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (30882562..30883395)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (30104482..30105315)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (31456699..31457532)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene arachidonate 5-lipoxygenase activating protein Neighboring gene uncharacterized LOC124903146 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:31312711-31312902 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:31317812-31319011 Neighboring gene VISTA enhancer hs1515 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:31372741-31373940 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:31379396-31379896 Neighboring gene long intergenic non-protein coding RNA 398 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:31398576-31399105 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:31401421-31402065 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7546 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7545 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:31436564-31437514 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:31437515-31438463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:31445187-31445996 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:31445997-31446806 Neighboring gene NANOG hESC enhancer GRCh37_chr13:31459446-31460017 Neighboring gene TEX26 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:31481009-31481510 Neighboring gene mesenteric estrogen dependent adipogenesis Neighboring gene testis expressed 26 Neighboring gene uncharacterized LOC105370145

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013
    2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • hCG1815504

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103813.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353680, BG199438

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      30882562..30883395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      30104482..30105315
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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