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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001256185.2 → NP_001243114.1  sorting nexin-12 isoform 1
See identical proteins and their annotated locations for NP_001243114.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Both variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AL590764, BC024301, DA736880
- Consensus CDS
-
CCDS14405.1
- UniProtKB/Swiss-Prot
- F8W8K5, Q8WUG9, Q9UMY4
- UniProtKB/TrEMBL
- A0A087X0R6, Q3SYF1
- Related
- ENSP00000481314.1, ENST00000622277.4
- Conserved Domains (1) summary
-
- cd07294
Location:27 → 158
- PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12
-
NM_001256186.2 → NP_001243115.1  sorting nexin-12 isoform 2
See identical proteins and their annotated locations for NP_001243115.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has multiple coding region differences, compared to variant 1, one of which results in a frameshift. The resulting protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AL590764, BC024301, DA847821
- Conserved Domains (1) summary
-
- cl02563
Location:27 → 83
- PX_domain; The Phox Homology domain, a phosphoinositide binding module
-
NM_001256187.2 → NP_001243116.1  sorting nexin-12 isoform 3
See identical proteins and their annotated locations for NP_001243116.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an exon in the coding region which results in a frameshift, compared to variant 1. The resulting protein (isoform 3) has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AL590764, BC024301, DB251077
- Conserved Domains (1) summary
-
- cl02563
Location:27 → 87
- PX_domain; The Phox Homology domain, a phosphoinositide binding module
-
NM_001256188.2 → NP_001243117.1  sorting nexin-12 isoform 4
See identical proteins and their annotated locations for NP_001243117.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 4), compared to isoform 1.
- Source sequence(s)
-
AL590764, BC024301, DA439434
- Consensus CDS
-
CCDS59169.1
- UniProtKB/TrEMBL
-
A0A087X0R6
- Related
- ENSP00000276105.3, ENST00000276105.3
- Conserved Domains (1) summary
-
- cl02563
Location:27 → 154
- PX_domain; The Phox Homology domain, a phosphoinositide binding module
-
NM_013346.4 → NP_037478.2  sorting nexin-12 isoform 1
See identical proteins and their annotated locations for NP_037478.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and represents use of an alternate promoter, compared to variant 1. Both variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
AL590764, BC024301, BC103847
- Consensus CDS
-
CCDS14405.1
- UniProtKB/Swiss-Prot
- F8W8K5, Q8WUG9, Q9UMY4
- UniProtKB/TrEMBL
- A0A087X0R6, Q3SYF1
- Related
- ENSP00000363392.3, ENST00000374274.8
- Conserved Domains (1) summary
-
- cd07294
Location:27 → 158
- PX_SNX12; The phosphoinositide binding Phox Homology domain of Sorting Nexin 12
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11Â Reference GRCh38.p14 Primary Assembly
- Range
-
71059247..71073426 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047442038.1 → XP_047297994.1  sorting nexin-12 isoform X1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1Â Alternate T2T-CHM13v2.0
- Range
-
69493335..69507559 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)