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    Gm5533 predicted gene 5533 [ Mus musculus (house mouse) ]

    Gene ID: 433384, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm5533provided by MGI
    Official Full Name
    predicted gene 5533provided by MGI
    Primary source
    MGI:MGI:3647595
    See related
    Ensembl:ENSMUSG00000056699 AllianceGenome:MGI:3647595
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG433384
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    Genomic context

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    See Gm5533 in Genome Data Viewer
    Location:
    1 H5; 1 84.92 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (181679130..181680754, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene dynein, axonemal, heavy chain 14 Neighboring gene STARR-positive B cell enhancer ABC_E5877 Neighboring gene predicted gene, 23690 Neighboring gene STARR-positive B cell enhancer ABC_E3345 Neighboring gene STARR-seq mESC enhancer starr_03245 Neighboring gene lamin B receptor Neighboring gene STARR-positive B cell enhancer ABC_E10070 Neighboring gene STARR-seq mESC enhancer starr_03248 Neighboring gene predicted gene, 33669 Neighboring gene ENAH actin regulator Neighboring gene STARR-seq mESC enhancer starr_03253 Neighboring gene STARR-seq mESC enhancer starr_03255 Neighboring gene STARR-seq mESC enhancer starr_03256 Neighboring gene small nuclear ribonucleoprotein G pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000067.7 Chromosome 1 Reference GRCm39 C57BL/6J

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188939.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC165229
      Related
      ENSMUST00000070987.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      181679130..181680754 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001007587.1: Suppressed sequence

      Description
      NM_001007587.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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