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    2310030G06Rik RIKEN cDNA 2310030G06 gene [ Mus musculus (house mouse) ]

    Gene ID: 66952, updated on 27-Nov-2024

    Summary

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    Official Symbol
    2310030G06Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310030G06 geneprovided by MGI
    Primary source
    MGI:MGI:1914202
    See related
    Ensembl:ENSMUSG00000032062 AllianceGenome:MGI:1914202
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610024D04Rik
    Summary
    Is expressed in pancreas epithelium. Orthologous to human C11orf52 (chromosome 11 open reading frame 52). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in placenta adult (RPKM 27.5), kidney adult (RPKM 13.8) and 13 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 2310030G06Rik in Genome Data Viewer
    Location:
    9 A5.3; 9 27.75 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (50650991..50657827, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (50739691..50746527, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene dihydrolipoamide S-acetyltransferase Neighboring gene DIX domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_24115 Neighboring gene predicted gene, 39337 Neighboring gene predicted gene, 51674 Neighboring gene STARR-seq mESC enhancer starr_24116 Neighboring gene STARR-seq mESC enhancer starr_24117 Neighboring gene STARR-seq mESC enhancer starr_24121 Neighboring gene crystallin, alpha B Neighboring gene heat shock protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E3828 Neighboring gene cilia and flagella associated protein 68

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of transcripts with enriched expression in the developing and adult pancreas. Hoffman BG, et al. Genome Biol, 2008. PMID 18554416, Free PMC Article
    2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C11orf52 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025865.3 → NP_080141.2  uncharacterized protein C11orf52 homolog

      Status: VALIDATED

      Source sequence(s)
      AC113987
      Consensus CDS
      CCDS23170.1
      UniProtKB/Swiss-Prot
      Q9CPS4, Q9D8L0
      Related
      ENSMUSP00000034564.3, ENSMUST00000034564.4
      Conserved Domains (1) summary
      pfam15147
      Location:1 → 127
      DUF4578; Domain of unknown function (DUF4578)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      50650991..50657827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D8L0.1 GenPept UniProtKB/Swiss-Prot:Q9D8L0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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