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    Gm5800 predicted gene 5800 [ Mus musculus (house mouse) ]

    Gene ID: 545047, updated on 27-Nov-2024

    Summary

    Official Symbol
    Gm5800provided by MGI
    Official Full Name
    predicted gene 5800provided by MGI
    Primary source
    MGI:MGI:3648769
    See related
    Ensembl:ENSMUSG00000068506 AllianceGenome:MGI:3648769
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG545047
    Expression
    Restricted expression toward testis adult (RPKM 3.8) See more
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    Genomic context

    See Gm5800 in Genome Data Viewer
    Location:
    14 C1; 14 26.64 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (51949101..51954589, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (51711644..51717132, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5622 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene Neighboring gene STARR-seq mESC enhancer starr_36677 Neighboring gene predicted gene 17079 Neighboring gene predicted gene, 49261 Neighboring gene eosinophil-associated, ribonuclease A family, pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Clone Names

    • MGC118309

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC545047

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034102.3NP_001029274.1  uncharacterized protein LOC545047

      See identical proteins and their annotated locations for NP_001029274.1

      Status: PREDICTED

      Source sequence(s)
      AC122877
      Consensus CDS
      CCDS27042.1
      UniProtKB/TrEMBL
      Q497L3
      Related
      ENSMUSP00000093605.3, ENSMUST00000095916.3
      Conserved Domains (1) summary
      pfam04822
      Location:1289
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      51949101..51954589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)