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    Mgat2 mannoside acetylglucosaminyltransferase 2 [ Mus musculus (house mouse) ]

    Gene ID: 217664, updated on 27-Nov-2024

    Summary

    Official Symbol
    Mgat2provided by MGI
    Official Full Name
    mannoside acetylglucosaminyltransferase 2provided by MGI
    Primary source
    MGI:MGI:2384966
    See related
    Ensembl:ENSMUSG00000043998 AllianceGenome:MGI:2384966
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GNT2; CDGS2; GNT-II; GLCNACTII
    Summary
    Enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within protein N-linked glycosylation via asparagine. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi membrane. Is expressed in several structures, including alimentary system; cranium; integumental system; sensory organ; and telencephalon. Used to study congenital disorder of glycosylation type IIa. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIa. Orthologous to human MGAT2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See Mgat2 in Genome Data Viewer
    Location:
    12 C2; 12 28.73 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (69230932..69233547)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (69184158..69186773)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E5332 Neighboring gene ribosomal protein L36A-like Neighboring gene RIKEN cDNA 9330151L19 gene Neighboring gene dynein, axonemal assembly factor 2 Neighboring gene STARR-seq mESC enhancer starr_32361 Neighboring gene polymerase (DNA directed), epsilon 2 (p59 subunit) Neighboring gene STARR-positive B cell enhancer ABC_E10753 Neighboring gene kelch domain containing 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC37173

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables carbohydrate binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables manganese ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables manganese ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in oligosaccharide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein N-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within protein N-linked glycosylation via asparagine IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein N-linked glycosylation via asparagine ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein N-linked glycosylation via asparagine ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in Golgi stack IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
    Names
    N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II
    beta-1,2-N-acetylglucosaminyltransferase II
    glcNAc-T II
    NP_666147.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146035.2NP_666147.1  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase precursor

      See identical proteins and their annotated locations for NP_666147.1

      Status: VALIDATED

      Source sequence(s)
      AI595654, AK083370, AK152925, BY101942
      Consensus CDS
      CCDS25947.1
      UniProtKB/Swiss-Prot
      Q3U6X4, Q8C3Z6, Q921V5
      UniProtKB/TrEMBL
      Q3TXN3, Q3U5X7
      Related
      ENSMUSP00000057905.9, ENSMUST00000060579.10
      Conserved Domains (1) summary
      pfam05060
      Location:87435
      MGAT2; N-acetylglucosaminyltransferase II (MGAT2)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      69230932..69233547
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)