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    GTF3C2 general transcription factor IIIC subunit 2 [ Homo sapiens (human) ]

    Gene ID: 2976, updated on 27-Nov-2024

    Summary

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    Official Symbol
    GTF3C2provided by HGNC
    Official Full Name
    general transcription factor IIIC subunit 2provided by HGNC
    Primary source
    HGNC:HGNC:4665
    See related
    Ensembl:ENSG00000115207 MIM:604883; AllianceGenome:HGNC:4665
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TF3C-beta; TFIIIC110; TFIIIC-BETA
    Summary
    Enables RNA polymerase III general transcription initiation factor activity. Contributes to DNA binding activity. Involved in transcription by RNA polymerase III. Located in nucleoplasm. Part of transcription factor TFIIIC complex. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in thyroid (RPKM 13.6), skin (RPKM 10.5) and 25 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See GTF3C2 in Genome Data Viewer
    Location:
    2p23.3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (27325854..27356764, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (27368277..27401404, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (27548721..27579631, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 54 Neighboring gene mitochondrial inner membrane protein MPV17 Neighboring gene urocortin Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27543343-27543946 Neighboring gene Sharpr-MPRA regulatory regions 9483 and 12628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15495 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15497 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15498 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27545801-27546773 Neighboring gene GTF3C2 antisense RNA 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr2:27579025-27579638 and GRCh37_chr2:27579639-27580252 Neighboring gene GTF3C2 antisense RNA 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27582391-27583132 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27592451-27593412 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27593413-27594374 Neighboring gene eukaryotic translation initiation factor 2B subunit delta Neighboring gene sorting nexin 17 Neighboring gene zinc finger protein 513

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A test of the model that RNA polymerase III transcription is regulated by selective induction of the 110 kDa subunit of TFIIIC. Innes F, et al. Nucleic Acids Res, 2006. PMID 16822860, Free PMC Article
    2. Human transcription factors IIIC2 , IIIC1 and a novel component IIIC0 fulfil different aspects of DNA binding to various pol III genes. Oettel S, et al. Nucleic Acids Res, 1997 Jun 15. PMID 9171097, Free PMC Article
    3. RNA polymerase III transcription repressed by Rb through its interactions with TFIIIB and TFIIIC2. Chu WM, et al. J Biol Chem, 1997 Jun 6. PMID 9169441
    4. DNA topoisomerase I and PC4 can interact with human TFIIIC to promote both accurate termination and transcription reinitiation by RNA polymerase III. Wang Z, et al. Mol Cell, 1998 Apr. PMID 9660958
    5. Different functional modes of p300 in activation of RNA polymerase III transcription from chromatin templates. Mertens C, et al. Mol Cell Biol, 2008 Sep. PMID 18644873, Free PMC Article

    See all (104) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The transcription factor Sp1 modulates RNA polymerase III gene transcription by controlling BRF1 and GTF3C2 expression in human cells.
      Title: The transcription factor Sp1 modulates RNA polymerase III gene transcription by controlling BRF1 and GTF3C2 expression in human cells.
    2. Evidence against the model that pol III transcription can be effectively modulated through the specific induction of TFIIIC110.
      Title: A test of the model that RNA polymerase III transcription is regulated by selective induction of the 110 kDa subunit of TFIIIC.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    HIV-1 interactions

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    Protein interactions

    Protein Gene Interaction Pubs
    Tat tat HIV-1 Tat upregulates the transcription by RNA polymerase III of co-transfected or endogenous cellular Alu-repeated sequences by activating transcription factor TFIIIC PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA0011

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA polymerase III general transcription initiation factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 5S class rRNA transcription by RNA polymerase III IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in tRNA transcription by RNA polymerase III IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase III IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase III IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		  
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
    		  
    part_of transcription factor TFIIIC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription factor TFIIIC complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor 3C polypeptide 2
    Names
    TFIIIC 110 kDa subunit
    general transcription factor IIIC, polypeptide 2, beta 110kDa
    transcription factor IIIC 110 kDa subunit
    transcription factor IIIC subunit beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035521.3 → NP_001030598.1  general transcription factor 3C polypeptide 2 isoform b

      See identical proteins and their annotated locations for NP_001030598.1

      Status: VALIDATED

      Source sequence(s)
      BC020981, D13636, DB286393
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Related
      ENSP00000264720.3, ENST00000264720.8
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_001318909.4 → NP_001305838.2  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Related
      ENSP00000352536.2, ENST00000359541.6
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. NM_001388380.3 → NP_001375309.2  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. NM_001394503.1 → NP_001381432.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. NM_001394504.1 → NP_001381433.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    6. NM_001394505.1 → NP_001381434.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    7. NM_001394506.1 → NP_001381435.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    8. NM_001394507.1 → NP_001381436.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    9. NM_001394508.1 → NP_001381437.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    10. NM_001394509.1 → NP_001381438.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    11. NM_001394510.1 → NP_001381439.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    12. NM_001394511.1 → NP_001381440.1  general transcription factor 3C polypeptide 2 isoform b

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    13. NM_001394512.1 → NP_001381441.1  general transcription factor 3C polypeptide 2 isoform d

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:554 → 591
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:555 → 640
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    14. NM_001394514.1 → NP_001381443.1  general transcription factor 3C polypeptide 2 isoform e

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:532 → 569
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:533 → 618
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    15. NM_001394515.1 → NP_001381444.1  general transcription factor 3C polypeptide 2 isoform f

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00320
      Location:553 → 590
      WD40; WD40 repeats
      sd00039
      Location:564 → 604
      7WD40; WD40 repeat [structural motif]

    16. NM_001394516.1 → NP_001381445.1  general transcription factor 3C polypeptide 2 isoform g

      Status: VALIDATED

      Source sequence(s)
      AC013413, AC074117, AC109828
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:482 → 519
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:483 → 568
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    17. NM_001521.4 → NP_001512.1  general transcription factor 3C polypeptide 2 isoform b

      See identical proteins and their annotated locations for NP_001512.1

      Status: VALIDATED

      Source sequence(s)
      BC020981, D13636, DA399212
      Consensus CDS
      CCDS1749.1
      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7
      Conserved Domains (3) summary
      PTZ00449
      Location:62 → 255
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      sd00039
      Location:558 → 595
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:559 → 644
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      27325854..27356764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047444016.1 → XP_047299972.1  general transcription factor 3C polypeptide 2 isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      27368277..27401404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054341540.1 → XP_054197515.1  general transcription factor 3C polypeptide 2 isoform X4

      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7

    2. XM_054341539.1 → XP_054197514.1  general transcription factor 3C polypeptide 2 isoform X4

      UniProtKB/Swiss-Prot
      D6W557, Q16632, Q8WUA4, Q9BWI7

    3. XM_054341537.1 → XP_054197512.1  general transcription factor 3C polypeptide 2 isoform X2

    4. XM_054341538.1 → XP_054197513.1  general transcription factor 3C polypeptide 2 isoform X3

    5. XM_054341536.1 → XP_054197511.1  general transcription factor 3C polypeptide 2 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8WUA4.2 GenPept UniProtKB/Swiss-Prot:Q8WUA4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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