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    Gm5071 predicted gene 5071 [ Mus musculus (house mouse) ]

    Gene ID: 278087, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Gm5071provided by MGI
    Official Full Name
    predicted gene 5071provided by MGI
    Primary source
    MGI:MGI:3645128
    See related
    Ensembl:ENSMUSG00000078123 AllianceGenome:MGI:3645128
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG278087; Mageb17-ps2
    Summary
    Orthologous to human MAGEB17 (MAGE family member B17). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 3.4) See more
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    Genomic context

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    See Gm5071 in Genome Data Viewer
    Location:
    X C2; X 40.56 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (90975116..90977971, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (91931510..91934365, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene melanoma antigen, family B pseudogene Neighboring gene cytidine 5'-triphosphate synthase pseudogene Neighboring gene STARR-seq mESC enhancer starr_47538 Neighboring gene PR domain containing 4 pseudogene Neighboring gene MAGE family member B1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    melanoma antigen, family B-like
    Names
    melanoma antigen, family B, 2
    predicted pseudogene 5071

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256004.1 → NP_001242933.1  melanoma antigen, family B-like

      See identical proteins and their annotated locations for NP_001242933.1

      Status: INFERRED

      Source sequence(s)
      AL627385
      Conserved Domains (2) summary
      pfam01454
      Location:139 → 280
      MAGE; MAGE family
      pfam12440
      Location:6 → 84
      MAGE_N; Melanoma associated antigen family N terminal

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      90975116..90977971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528069.2 → XP_006528132.1  melanoma antigen, family B-like isoform X1

      See identical proteins and their annotated locations for XP_006528132.1

      Related
      ENSMUSP00000160104.1, ENSMUST00000104922.3
      Conserved Domains (2) summary
      pfam01454
      Location:139 → 280
      MAGE; MAGE family
      pfam12440
      Location:6 → 84
      MAGE_N; Melanoma associated antigen family N terminal

    2. XM_006528070.2 → XP_006528133.1  melanoma antigen, family B-like isoform X1

      See identical proteins and their annotated locations for XP_006528133.1

      Related
      ENSMUSP00000160103.1, ENSMUST00000381698.1
      Conserved Domains (2) summary
      pfam01454
      Location:139 → 280
      MAGE; MAGE family
      pfam12440
      Location:6 → 84
      MAGE_N; Melanoma associated antigen family N terminal

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001083629.1: Suppressed sequence

      Description
      NM_001083629.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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