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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001079910.2 → NP_001073379.1 leucine-rich repeat- and IQ domain-containing protein 1
See identical proteins and their annotated locations for NP_001073379.1
Status: VALIDATED
- Source sequence(s)
-
AB058704, AC079631, AU122206, BU608190, BU677204, CA502842, DB447399, DN831755
- Consensus CDS
-
CCDS41816.1
- UniProtKB/Swiss-Prot
- Q567P4, Q96JM4, Q9BS17, Q9HA36
- UniProtKB/TrEMBL
-
A0A140VJN5
- Related
- ENSP00000376910.2, ENST00000393217.7
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- cd00116
Location:963 → 1095
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam12799
Location:818 → 856
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
85036351..85272805
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011538819.4 → XP_011537121.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X3
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- cd00116
Location:963 → 1095
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam12799
Location:818 → 856
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
-
XM_024449222.2 → XP_024304990.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X7
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
- cl26018
Location:971 → 1108
- NEL; C-terminal novel E3 ligase, LRR-interacting
- cl26511
Location:162 → 644
- Neuromodulin_N; Gap junction protein N-terminal region
-
XM_011538817.3 → XP_011537119.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X1
- Conserved Domains (6) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- cd00116
Location:963 → 1095
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam12799
Location:818 → 856
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
- pfam14988
Location:164 → 343
- DUF4515; Domain of unknown function (DUF4515)
-
XM_024449221.2 → XP_024304989.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X6
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
- cl26018
Location:971 → 1108
- NEL; C-terminal novel E3 ligase, LRR-interacting
- cl26511
Location:162 → 644
- Neuromodulin_N; Gap junction protein N-terminal region
-
XM_047429655.1 → XP_047285611.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X12
-
XM_011538818.3 → XP_011537120.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X2
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- cd00116
Location:963 → 1095
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam12799
Location:818 → 856
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
-
XM_024449220.2 → XP_024304988.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X5
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
- cl26018
Location:971 → 1108
- NEL; C-terminal novel E3 ligase, LRR-interacting
- cl26511
Location:162 → 644
- Neuromodulin_N; Gap junction protein N-terminal region
-
XM_047429651.1 → XP_047285607.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X4
-
XM_047429652.1 → XP_047285608.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X4
-
XM_047429656.1 → XP_047285612.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X13
-
XM_047429657.1 → XP_047285613.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X14
-
XM_047429653.1 → XP_047285609.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X8
-
XM_024449223.2 → XP_024304991.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X9
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
- cl26018
Location:971 → 1108
- NEL; C-terminal novel E3 ligase, LRR-interacting
- cl26511
Location:162 → 644
- Neuromodulin_N; Gap junction protein N-terminal region
-
XM_047429654.1 → XP_047285610.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X11
-
XM_011538823.3 → XP_011537125.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X10
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- cd00116
Location:963 → 1095
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam12799
Location:818 → 856
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
-
XM_011538824.3 → XP_011537126.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X16
- Related
-
ENST00000525971.6
- Conserved Domains (5) summary
-
- smart00015
Location:1338 → 1354
- IQ; Calmodulin-binding motif
- cd00116
Location:963 → 1095
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam12799
Location:818 → 856
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:1037 → 1091
- LRR_8; Leucine rich repeat
-
XM_011538825.3 → XP_011537127.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X15
- Conserved Domains (3) summary
-
- sd00033
Location:820 → 841
- LRR_RI; leucine-rich repeat [structural motif]
- pfam12799
Location:818 → 856
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:1015 → 1070
- LRR_8; Leucine rich repeat
RNA
-
XR_944764.3 RNA Sequence
-
XR_944765.3 RNA Sequence
-
XR_944766.3 RNA Sequence
-
XR_001748890.2 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
85015741..85253151
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054373435.1 → XP_054229410.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X3
-
XM_054373440.1 → XP_054229415.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X7
-
XM_054373433.1 → XP_054229408.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X1
-
XM_054373439.1 → XP_054229414.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X6
-
XM_054373445.1 → XP_054229420.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X12
-
XM_054373434.1 → XP_054229409.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X2
-
XM_054373438.1 → XP_054229413.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X5
-
XM_054373436.1 → XP_054229411.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X4
-
XM_054373437.1 → XP_054229412.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X4
-
XM_054373446.1 → XP_054229421.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X13
-
XM_054373447.1 → XP_054229422.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X14
-
XM_054373441.1 → XP_054229416.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X8
-
XM_054373442.1 → XP_054229417.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X9
-
XM_054373444.1 → XP_054229419.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X11
-
XM_054373443.1 → XP_054229418.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X10
-
XM_054373448.1 → XP_054229423.1 leucine-rich repeat and IQ domain-containing protein 1 isoform X15
RNA
-
XR_008488693.1 RNA Sequence
-
XR_008488694.1 RNA Sequence
-
XR_008488695.1 RNA Sequence
-
XR_008488696.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_032165.3: Suppressed sequence
- Description
- NM_032165.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.