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    Chd9 chromodomain helicase DNA binding protein 9 [ Mus musculus (house mouse) ]

    Gene ID: 109151, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Chd9provided by MGI
    Official Full Name
    chromodomain helicase DNA binding protein 9provided by MGI
    Primary source
    MGI:MGI:1924001
    See related
    Ensembl:ENSMUSG00000056608 AllianceGenome:MGI:1924001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AD013; PRIC320; mKIAA0308; 1810014J18Rik; 9030205D12Rik; A330063D19Rik
    Summary
    Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and ATP-dependent activity, acting on DNA. Predicted to be involved in DNA duplex unwinding; chromatin looping; and chromatin remodeling. Predicted to be located in cytosol and nucleoplasm. Is expressed in bone; endochondral bone; and periosteum. Orthologous to human CHD9 (chromodomain helicase DNA binding protein 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in CNS E14 (RPKM 3.2), whole brain E14.5 (RPKM 3.0) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Chd9 in Genome Data Viewer
    Location:
    8 C4; 8 44.25 cM
    Exon count:
    47
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (91554930..91781144)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (90828302..91054516)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35963 Neighboring gene STARR-positive B cell enhancer mm9_chr8:93319223-93319524 Neighboring gene STARR-seq mESC enhancer starr_22282 Neighboring gene STARR-seq mESC enhancer starr_22284 Neighboring gene predicted gene, 19935 Neighboring gene STARR-positive B cell enhancer mm9_chr8:93367415-93367716 Neighboring gene STARR-seq mESC enhancer starr_22288 Neighboring gene VISTA enhancer mm1483 Neighboring gene STARR-seq mESC enhancer starr_22296 Neighboring gene predicted gene 6658 Neighboring gene STARR-positive B cell enhancer ABC_E3792 Neighboring gene STARR-positive B cell enhancer ABC_E8848 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:93594488-93594671 Neighboring gene STARR-seq mESC enhancer starr_22297 Neighboring gene predicted gene, 39221 Neighboring gene predicted gene, 22428 Neighboring gene RB transcriptional corepressor like 2 Neighboring gene AKT interacting protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. New Face for Chromatin-Related Mesenchymal Modulator: n-CHD9 Localizes to Nucleoli and Interacts With Ribosomal Genes. Salomon-Kent R, et al. J Cell Physiol, 2015 Sep. PMID 25689118, Free PMC Article
    2. Chd9 mediates highly loosened chromatin structure in growing mouse oocytes. Ooga M, et al. Biochem Biophys Res Commun, 2018 Jun 7. PMID 29665362
    3. Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development. Alendar A, et al. PLoS One, 2020. PMID 32453735, Free PMC Article
    4. Expression and regulation of CReMM, a chromodomain helicase-DNA-binding (CHD), in marrow stroma derived osteoprogenitors. Marom R, et al. J Cell Physiol, 2006 Jun. PMID 16523501
    5. In vivo association of CReMM/CHD9 with promoters in osteogenic cells. Shur I, et al. J Cell Physiol, 2006 May. PMID 16419031

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development.
      Title: Gene expression regulation by the Chromodomain helicase DNA-binding protein 9 (CHD9) chromatin remodeler is dispensable for murine development.
    2. a loosened chromatin structure, which is mediated by Chd9, is a prerequisite for the acquisition of totipotency after fertilization.
      Title: Chd9 mediates highly loosened chromatin structure in growing mouse oocytes.
    3. Our new findings support the role for CHD9 in chromatin regulation and association with rDNA genes, in addition to its already known function in transcription control of tissue specific genes
      Title: New Face for Chromatin-Related Mesenchymal Modulator: n-CHD9 Localizes to Nucleoli and Interacts With Ribosomal Genes.
    4. CReMM is a chromodomain helicase-DNA-binding protein expressed by osteoprogenitors[CReMM]
      Title: Expression and regulation of CReMM, a chromodomain helicase-DNA-binding (CHD), in marrow stroma derived osteoprogenitors.
    5. Results imply that in osteogenic cells CReMM/CHD9 selectively interacts with promoters activated in the tissue at the appropriate time of embryonic development.
      Title: In vivo association of CReMM/CHD9 with promoters in osteogenic cells.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent H2AZ histone chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent H3-H4 histone complex chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chromatin extrusion motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cohesin loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables double-stranded DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables forked DNA-dependent helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables four-way junction helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables single-stranded 3'-5' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in chromatin looping IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 9
    Names
    ATP-dependent helicase CHD9
    PPAR-alpha-interacting complex protein 320 kDa
    ciprofibrate-bound protein PRIC320
    peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein
    NP_001297459.1
    NP_796198.1
    XP_006530632.1
    XP_006530633.1
    XP_006530634.1
    XP_006530635.1
    XP_011246574.1
    XP_011246575.1
    XP_011246576.1
    XP_011246577.1
    XP_017168006.1
    XP_017168007.1
    XP_017168008.1
    XP_017168009.1
    XP_017168010.1
    XP_030099098.1
    XP_030099099.1
    XP_030099100.1
    XP_036009611.1
    XP_036009612.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310530.1 → NP_001297459.1  chromodomain-helicase-DNA-binding protein 9 isoform 1

      See identical proteins and their annotated locations for NP_001297459.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer isoform (1).
      Source sequence(s)
      CF532542, DQ127229
      Consensus CDS
      CCDS80912.1
      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Related
      ENSMUSP00000148088.2, ENSMUST00000209423.2
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    2. NM_177224.2 → NP_796198.1  chromodomain-helicase-DNA-binding protein 9 isoform 2

      See identical proteins and their annotated locations for NP_796198.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate in-frame splice site in the 3' coding region compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      AK034446, DQ127229
      Consensus CDS
      CCDS22517.1
      UniProtKB/TrEMBL
      B7ZNF8
      Related
      ENSMUSP00000046356.7, ENSMUST00000048665.8
      Conserved Domains (7) summary
      smart00592
      Location:2530 → 2574
      BRK; domain in transcription and CHROMO domain helicases
      smart00298
      Location:691 → 753
      CHROMO; Chromatin organization modifier domain
      cd00046
      Location:878 → 1027
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:862 → 1149
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1181 → 1295
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:773 → 826
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam07533
      Location:2458 → 2496
      BRK; BRK domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      91554930..91781144
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312517.2 → XP_017168006.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Related
      ENSMUSP00000105243.3, ENSMUST00000109614.9
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    2. XM_017312519.2 → XP_017168008.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2533 → 2577
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2459 → 2499
      BRK; BRK domain

    3. XM_006530570.4 → XP_006530633.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2545 → 2589
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2471 → 2511
      BRK; BRK domain

    4. XM_036153718.1 → XP_036009611.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2532 → 2576
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2458 → 2498
      BRK; BRK domain
      cd21577
      Location:219 → 360
      KLF3_N; N-terminal domain of Kruppel-like factor 3

    5. XM_017312520.2 → XP_017168009.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2529 → 2573
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2455 → 2495
      BRK; BRK domain

    6. XM_011248272.4 → XP_011246574.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      See identical proteins and their annotated locations for XP_011246574.1

      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    7. XM_011248273.4 → XP_011246575.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      See identical proteins and their annotated locations for XP_011246575.1

      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    8. XM_017312518.2 → XP_017168007.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    9. XM_011248274.4 → XP_011246576.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      See identical proteins and their annotated locations for XP_011246576.1

      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    10. XM_011248275.4 → XP_011246577.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      See identical proteins and their annotated locations for XP_011246577.1

      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    11. XM_006530569.4 → XP_006530632.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      See identical proteins and their annotated locations for XP_006530632.1

      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    12. XM_030243238.2 → XP_030099098.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/Swiss-Prot
      Q7TMV5, Q8BJG8, Q8BYH8, Q8BZJ2, Q8CHG8
      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (8) summary
      PTZ00121
      Location:510 → 765
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:858 → 1479
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      COG5422
      Location:158 → 362
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cd18663
      Location:769 → 827
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:685 → 749
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:859 → 1080
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2472 → 2512
      BRK; BRK domain

    13. XM_036153719.1 → XP_036009612.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (7) summary
      PTZ00121
      Location:4 → 259
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2040 → 2084
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:352 → 973
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:263 → 321
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:179 → 243
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:353 → 574
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:1966 → 2006
      BRK; BRK domain

    14. XM_006530572.4 → XP_006530635.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (7) summary
      PTZ00121
      Location:4 → 259
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2040 → 2084
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:352 → 973
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:263 → 321
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:179 → 243
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:353 → 574
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:1966 → 2006
      BRK; BRK domain

    15. XM_017312521.3 → XP_017168010.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

      Conserved Domains (6) summary
      smart00592
      Location:1954 → 1998
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:266 → 887
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:177 → 235
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:93 → 157
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:267 → 488
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:1880 → 1920
      BRK; BRK domain

    16. XM_006530571.5 → XP_006530634.1  chromodomain-helicase-DNA-binding protein 9 isoform X6

      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (7) summary
      PTZ00121
      Location:37 → 292
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2073 → 2117
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:385 → 1006
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:296 → 354
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:212 → 276
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:386 → 607
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:1999 → 2039
      BRK; BRK domain

    17. XM_030243239.2 → XP_030099099.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

      UniProtKB/TrEMBL
      B7ZNF8
      Conserved Domains (7) summary
      PTZ00121
      Location:37 → 292
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2057 → 2101
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:385 → 1006
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:296 → 354
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:212 → 276
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:386 → 607
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:1983 → 2023
      BRK; BRK domain

    18. XM_030243240.2 → XP_030099100.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

      Conserved Domains (6) summary
      smart00592
      Location:1954 → 1998
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:266 → 887
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:177 → 235
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:93 → 157
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:267 → 488
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:1880 → 1920
      BRK; BRK domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BYH8.2 GenPept UniProtKB/Swiss-Prot:Q8BYH8

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